Raphanus sativus (radish): 108828142
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Entry
108828142 CDS
T06014
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108828142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108828142
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108828142
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108828142
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108828142
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
108828142
NCBI-ProteinID:
XP_018457227
UniProt:
A0A6J0LAV9
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All DBs
Position
9:21618104..21622071
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AA seq
790 aa
AA seq
DB search
MQSEKILDPRLLSIDTNTTTTAGRKAMSVVKPPPPPSILDRFKALLNQREDEFGGEDPSS
EEVVQLYEVVLGELTFNSKPIITDLTIIADERREHGEGIANAICTRILEAPVEQKLPSLY
LLDSIVKNIGRDYVRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSGVFPSPVLRKIE
MQLKLSSAANSQSSSVGASEPTQPTRGIHVNPKYLRRLEPSAAESNLRGISSSAKVYSQN
SVGGYDDFEDQLDSPSSLAGPRSSTAGTMALSSSAIGADGFPRRFSDGVNSSNQAYNYGM
GRATGRDDEHMDWRRKDNFGQGNDHERPRALIDAYGVDTSKHTSISRPIRNVNGIHSKMV
TPWQNTEEEEFDWDDMSPTLERSRAGEFLRSSVPALGSVRPRPRLGNILDFQLDSDIKNG
MNSRFGRGPAMISRVGPSGADALADGTWPHLGVRGSNSLPVPSAHVHHLANPGNSMLSHL
HGKPLYRPENQVSHSHLNDMTQQNQILGNYLPSLSAMAPRAIQSLLPHGHGYPPQGSTIR
PSLSIHGGEGMHPHSSGVSSQIGPISQNPSLGASNQPPGGAFSGLIGSLMAQGLISLNNQ
PTGQGASVMEFDADMLKIRNESAITALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNR
MSKNHKQKPSRKWFVSGSMWLSGAEALGAEAVPGFLPVEPTTEKKDDEEMAVPADEDQTS
CALCGEPFEDFYSDETEEWMYKGAVYMNAPDGSTTDLDKSQLGPIVHAKCRPESNGGDME
EGSQRKRMRS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggagaaaatcctcgaccctaggcttctctccatcgataccaacaccaccacc
accgccggccgcaaagcgatgtccgtcgttaaaccgccgccgccgccgtcgatactcgac
cggttcaaggctctgctcaatcagcgcgaggacgagttcggcggcgaggatccgagttcg
gaagaggttgttcagctctacgaggttgttctgggcgagctcactttcaattccaagcct
atcatcactgatctcactatcatcgccgatgagcgacgggagcatggcgaaggaatcgct
aatgctatctgcactcgtatcctcgaggcaccggttgagcaaaagctgccatctttgtat
cttttagatagtattgtgaagaacattgggagggactatgttcgttacttctcatctcgt
ttaccagaggtcttttgtttagcgtacaggcaagcgcacccgagtttacatccttcaatg
cgccatctgtttggaacttggtctggtgttttcccgtcgcctgtgttacgcaagattgag
atgcagttgaagctttcttctgcagcaaacagccaatcttcttccgtaggggcttctgag
ccaactcaaccaacgagggggatacatgttaatcccaaatatcttcgtaggctggagccc
tctgccgccgaaagtaacttgagaggaataagttccagtgcaaaagtgtatagtcaaaat
tcagtcggcgggtatgatgattttgaagatcagttagatagcccatcttccctagccgga
ccaaggtctagtacagctggaactatggccctctcatcttctgcaattggagcagatggg
tttcctagaaggtttagtgatggagttaattcttctaatcaagcctataactatggaatg
ggtcgagctactggcagagatgatgaacacatggactggcgaagaaaggacaacttcggc
caaggaaatgaccatgaaagacccagagctttgatagatgcatatggagttgacaccagc
aaacacacatccatcagtagaccaattcgcaacgtgaatggtatccacagtaagatggtt
acaccatggcagaacaccgaggaagaagagtttgattgggacgatatgagcccgacacta
gagcgtagtagggctggtgaatttttgcgatcatctgttccagcgttaggaagtgtaagg
ccaagacctagactaggaaacatacttgattttcagttagattctgacattaagaacggt
atgaactctcgttttggacgaggacctgcgatgatatcaagagttgggccttctggtgct
gatgctcttgctgatgggacatggccccatttgggtgttagaggatccaactctctccct
gtaccttctgctcacgttcatcatttggcaaatcctggtaattcgatgttaagtcacttg
catggcaagcctttatataggccagaaaaccaggtctcccacagtcatcttaatgatatg
actcaacagaatcaaatactaggtaattatttgccgtccttatcagcaatggctccaagg
gcaattcaatcactgttaccgcacgggcatggttaccctccacaagggtcaaccattaga
ccatctttatcaatccatggtggggaaggcatgcatcctcattcgtcaggggtttcatct
caaataggacccatctctcagaatccttcgttgggagcctctaatcaaccaccgggcggg
gcattctctggtctgattggctctctcatggctcaaggtttgatctcgttgaacaatcag
cctactggccagggagcttcggtgatggagtttgatgcggacatgctcaagatacgtaac
gagtctgcaataactgctctatatggggatcttccgaggcaatgcacaacatgtggtcta
cgctttaagtgccaagaagaacacagtaaacatatggattggcatgtaacgaagaacagg
atgtccaagaaccataagcagaagccttctcggaaatggtttgtaagtggtagcatgtgg
cttagtggtgcagaggcacttggagctgaagcagtgccggggttcttacccgtagagcca
acaacagaaaagaaggatgacgaagagatggcagttcctgcagatgaagaccaaacttca
tgcgcattatgtggtgagccgtttgaagacttctatagtgacgagaccgaggaatggatg
tacaaaggtgccgtgtacatgaatgcacctgatggatcaacaacagatttggacaagtct
cagttaggtcctattgtacatgctaagtgcaggccagagtccaatgggggtgatatggaa
gagggtagtcaaagaaaaagaatgcggagttag
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