Raphanus sativus (radish): 108828183
Help
Entry
108828183 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108828183
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108828183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108828183
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108828183
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
108828183
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108828183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
108828183
NCBI-ProteinID:
XP_018457284
UniProt:
A0A6J0LCE1
LinkDB
All DBs
Position
9:complement(1524274..1529739)
Genome browser
AA seq
988 aa
AA seq
DB search
MKTATQLFKGTNVFMSRNLVPPEVFDTLLDTFKLNGAEIFLCCDPSRNGPSDFHVIASPL
HEKFEDLKAKGCNLIGPQCVLSCAKEGRALPQGGFTCCLAMDGLKVLASGFQIDEKVKIE
KLVTSMGGVLVSRTSSDVNFVIVKNVLAAKYKWALYVQKKPVVALSWLHQCWNEHRVVPQ
EPYKIPPFSGLRICVTKIPADQRKGMEKLISENGGKYSAELTKACTHLIADAAEGDKYKV
ARKWGHIQIVTRKWFEQSIARKVCLNEELYPVLGSVSLSRGVRDLRNHDNQEKFPECPVS
LSHSTAVAEDSYASYAQSRESDIEPCASQNLLSKSMNPSSHVKEPSKDPTTEPQEQNISG
CTAMDLESEDNDLYLSDCKIFLLGFEASEMRRLVKLVRRGGGSRYMILSERMTHIVVGTP
SESEKKEARSVAASGVIQVVTPSWLEDCDREKKEIPIHKIYTAHSLILPRDSACLTKGSR
EGMPGMEKGKITFPQTMAYDSPSRSINVPDEAATLRGKNKETVLDFGRKDEIHVERKPVP
PKQKETFNSLVTNKSKEQQKVQCESSGQSKQERKSSVFKGKIFCFSHSFPEDRRPEIVEW
VNQGGGEVVNDPFIKNTHFTIECHGMFRSAGGTQTIYVSSHWVRSCLEDGLLLNVSSHIL
YSPLPCQAPLPGFESLRFCVSHYEGKDRLLLRNLCVVLGAKFVEKQTKKVTHLLCKFAHG
PKYDAASKWGIVPVTSDWLYECVRQNQVVCPDNYHPKEMNTQDREAGIGLATQFHTQSVP
VASRDTDSLLVSHSEDREKSQNFAGKNGCEKSEVNNRLGETGREQSFPSKKPKLFRDGQE
RDAFPMDEHPSNFARPLKDGDGIGFGNDVVASGGEVPDVADTIEDLLEQTSKIQDQNSPG
SGRISEKTLFPSSEQYNSGNHSVTGLSRHWINRVQENDDGCKPPGDVPTGTYGNFSETQT
ESQVVGYEEDLSGRQMLIDRVRTRSSLT
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggcgacgcaactgttcaaagggacaaacgtattcatgtctcgtaacctggta
ccccctgaagtcttcgacacactcctcgacaccttcaagctaaacggcgccgaaatcttc
ctctgctgcgatccctcccgcaacggtccctccgacttccacgtcatcgcttctcccctt
catgagaagttcgaggatcttaaagctaagggttgtaacttaataggtccgcaatgtgtg
ctctcttgtgcaaaagagggtagagctctgccacaagggggattcacttgttgtttagcc
atggatggtcttaaggttcttgcttctggtttccagatcgatgaaaaggtcaagatcgag
aagctagttacgtccatggggggagttttggtttccagaacttcttcagatgtcaacttc
gtcattgtcaagaacgtcttggctgctaagtacaagtgggccctgtatgttcagaagaag
ccagttgttgcactgagttggttacatcagtgttggaatgagcatcgtgtggttccgcag
gaaccatataagattcctcctttttctggattgaggatctgtgtcacaaaaattccagca
gatcagcgtaagggaatggagaagctaatttcagaaaatggagggaagtactctgcggag
ctaacaaaggcgtgtacacatctgatcgctgatgctgccgaaggtgacaaatacaaagtt
gctcggaaatggggtcacattcaaattgttacgcggaaatggtttgagcagtccattgct
agaaaagtttgtctcaatgaagagttgtatcctgttctgggttccgtatccttgagtaga
ggggtgagagatttacggaaccatgataatcaagaaaaatttcctgaatgtccagtgtca
ctttcgcattcgactgcggttgcggaagactcatatgcttcttatgctcagtccagagag
tcagatatagaaccatgtgcctcacaaaatcttctttccaaatctatgaatcccagtagc
catgttaaagaaccaagtaaagacccaactacagagccgcaagagcaaaatataagtggt
tgtaccgccatggatctagaatctgaagacaatgacctgtacttatcagattgtaaaatt
ttcttgcttggttttgaagcctctgaaatgcgtagacttgttaagttggtccgaagaggt
ggtggatcacggtatatgattcttagcgaaagaatgacacatattgttgttggaactcct
tcagagagtgagaaaaaggaagcgaggagtgttgcagcttctggtgtcattcaagtagtt
acccccagttggcttgaagattgtgatcgtgagaaaaaagaaattcccattcataaaata
tatactgctcacagtttgattcttccaagagattctgcatgcttgaccaagggatctcgt
gaaggaatgccaggtatggaaaagggtaaaataacttttcctcagaccatggcatatgat
tccccttcgaggagtatcaatgttccagatgaggccgcaactttacggggaaagaataaa
gaaacagtgctggactttggcaggaaagatgagattcacgtcgaaagaaagccagtacca
ccgaagcaaaaggaaacatttaattcccttgtaactaataaaagcaaagaacaacagaaa
gttcaatgcgaatccagtggccagagcaagcaagaaagaaagtcatcagtatttaagggg
aagatattttgtttctcacattcgtttcctgaagataggcgacccgaaatcgtggaatgg
gtgaatcaaggagggggagaggtggtaaatgatccctttataaagaacacacattttact
attgaatgccatggtatgttccggagtgctgggggtacccaaaccatttatgtctcgagt
cactgggttcgatcttgtttagaggatggtttgttacttaacgttagtagtcatatcctc
tattcgcctcttccctgccaggctcctttgcctggatttgaaagccttcgcttttgtgtt
tcccattatgaagggaaggatagattactcctgagaaatttgtgtgtcgttctcggagca
aaatttgtggaaaaacaaaccaagaaagtgactcacttgctatgcaagtttgctcacgga
cctaagtatgacgcagcttccaagtggggaatagttcccgtgacatctgactggctctat
gaatgtgttagacagaatcaagttgtttgtccagataactatcatccaaaggaaatgaac
actcaagaccgggaagcagggattggcttggcaactcaatttcatacacagtctgtgcca
gtggcctcaagggacactgattctctgcttgtaagtcactctgaagatagggaaaaatct
caaaattttgctggcaaaaatggctgcgagaaaagtgaggtaaacaacagacttggagaa
actggaagggaacagagttttccgtctaagaagccaaaactttttagagatggtcaagag
cgtgatgcgtttcctatggatgaacatccaagtaattttgctcgccctttaaaggatgga
gatggtattggttttggaaacgacgtagtagcaagtggtggcgaagttccagatgtggct
gatacgattgaggatctgttggagcagacaagtaaaattcaagatcagaactctcctggg
agtgggaggatttcagagaaaactctttttccaagtagtgaacaatacaacagcgggaat
cattctgtgactggcctgtctagacactggataaacagggtccaggagaatgacgatgga
tgcaagcctccaggagatgtacctacaggcacttacggaaactttagtgagacgcagaca
gagtcgcaggttgttggctacgaggaagatctttcaggaaggcagatgcttatcgataga
gtaagaacacgaagcagcttaacataa
DBGET
integrated database retrieval system
