Raphanus sativus (radish): 108828339
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Entry
108828339 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108828339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108828339
03041 Spliceosome [BR:
rsz03041
]
108828339
03009 Ribosome biogenesis [BR:
rsz03009
]
108828339
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108828339
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108828339
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108828339
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108828339
Complex C
U4/U6.U5 tri-SnRNP related factors
108828339
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108828339
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108828339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108828339
NCBI-ProteinID:
XP_018457496
UniProt:
A0A6J0LDC3
LinkDB
All DBs
Position
9:complement(35533503..35538465)
Genome browser
AA seq
993 aa
AA seq
DB search
MGSVKRKSAEESSDCAPPQKLQREDDDDSTQIINEELVGCVHDVSFPENYVPPAPSSSNG
DNKPPAKEFPFALDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLRENQRVIY
TSPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEVMREVA
WIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIV
YTDYRPTPLQHYVFPAGGSGLYLVVDEKAKFHEDSFQKSLNALVPANDADKKRGNGKSQK
GLMLGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDSVE
TIFTSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDE
KMEPAVAKSMLKGSADALNSAFHLSYNMLLNQLRSEDGDPENLLRNSFFQFQADRAIPDL
EKQIKALQEERDSMVIEEEESLKNYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVC
LDCTNEDGEPQSFSIEDQETWGVIMKFNKVKNLSEDDDNKRPEDANYTVDVLTRCLVSRD
GAGKKKIKPVPFKERGEPVVVSVPLSQIKSLSSAIMNIPKDYLQLEARENALKKVSELLS
RHPDGIPLDPEVDMKIRSSSYKTTVRRLEAVENLFEKYKIAKSPLIGEKLKVLHMKEELT
AKIKSLKKAVRSSTALAFKDELKARKRVLRRLGYITSDGVVELKGKVACEISSAEELTLT
ELMFSGVFKEAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAECQLDC
KVDIDVESFVHSFRPDIMEAVYAWAKGSKFYEIMEIARVFEGSLIRAIRRMEEVLQQLIV
AAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagagaaaatcggccgaggaatcttctgattgtgctccaccgcagaag
cttcagagagaagatgatgatgattccactcagatcatcaacgaagagctcgtgggttgc
gttcacgacgtctccttccctgaaaactacgtccctcctgctccctcctcctccaacgga
gacaacaaaccaccggcaaaagagttccctttcgcccttgactccttccagtctgaagct
atcaagtgtctcgataatggcgaatctgtcatggtctcagctcatacatcagctggtaaa
acagttgtggcatcctatgctatcgccatgtctttaagagagaaccagagggttatttac
acctcacctattaaggcattgagtaatcagaagtacagagattttaaagaagagttttct
gacgttggtttgatgactggggatgtcacaattgatcctaacgcctcttgtctggtcatg
accacagagatcttgcgtagcatgcagtacaaagggtcagaggttatgagggaggttgct
tggattatttttgatgaggtgcattacatgcgtgatagcgaaagaggtgtggtttgggaa
gaaagtattgtaatggctcccaagaattctcgttttgtgtttctttctgcgactgtgcct
aatgcgaaggagtttgctgattgggttgcaaaggttcacaaacaaccatgccatattgtt
tacactgattataggccaactccgcttcagcactatgtattccctgccggagggagtgga
ctttacttggttgtggatgaaaaggctaaattccacgaggatagcttccagaaatctctt
aacgcattggttcctgcgaatgatgctgacaagaaaagagggaatgggaaatctcaaaag
gggttgatgcttggaaaacttggtgaagaaagtgacatcttcaaactggtgaaaatgatt
attcagcggcaatatgatcccgtgattttgttcagtttcagcaaaaaggaatgtgaggca
cttgctatgcagatgtctaagatggacttaaacagtgacgatgagaaagattccgtggag
acaatctttactagcgcaatcgatatgctttcagatgatgataagaagctacctcaggtt
tcaaatattttacccatcttaaaacgtggtatcggggttcatcattcgggtctgctaccg
attttgaaagaagtaattgagatattatttcaagaaggtctgattaagtgtttgtttgca
acagagacatttagtattggattgaacatgccggcaaagacggttgtgtttacaaatgta
cgcaagttcgatggagacaagttccgctggctatctagtggtgagtacattcagatgagt
ggtcgtgctggacgtcgaggtattgacaaacgaggtatctgcatcctcatggttgatgag
aaaatggaacccgctgttgctaaatcaatgctcaaaggaagtgctgatgctttgaacagt
gccttccatttgagctataacatgcttctaaaccagttgcggagtgaagatggtgatcct
gagaatcttctccgcaattcattctttcagtttcaagctgaccgtgctatcccggatctc
gagaagcaaataaaagctcttcaagaagagagagactccatggtgattgaagaagaagaa
agcctaaagaattactataacctgattttgcaatacaagagtctgaagaaggatatacgt
gagattgtgttctctccaaagtactgcttaccttttttgctgccaaacagagctgtttgc
ttggactgcacgaacgaagatggagagccacagtcattcagcattgaagaccaggagaca
tggggagtgataatgaaattcaacaaagttaaaaacttatctgaagatgatgataataaa
agaccagaggatgcaaactacaccgtagatgtgctgactagatgtttggtcagcagagat
ggcgctggcaagaagaaaattaagcctgtgccatttaaagagcgtggtgagcctgttgtg
gtctctgttcctttatctcagattaagagcttaagcagtgcaatcatgaatataccgaaa
gattatttacaacttgaagctagagagaatgctctgaagaaggtctctgagttactctct
agacatcctgatggaatacccctagatcctgaagttgatatgaagattcggagcagctct
tacaaaacgactgttcgtcgacttgaggctgtggaaaacctatttgaaaaatacaagatt
gcaaaatctccactcataggagagaagctgaaagttctacacatgaaggaagagctaaca
gccaagatcaaatcacttaagaaggccgtcagatcctcaacagctttggcgtttaaagat
gaacttaaggccagaaagcgtgttttgcgaaggctaggatacatcaccagcgatggtgtt
gtggagttgaaagggaaggttgcatgcgaaatcagcagtgcagaagaattgacactaacg
gagctaatgttcagtggtgtcttcaaggaggcaaaggtggaggaattggtttctctcctc
tcttgctttgtgtggcgagagaggctccctgacgcagccaaacccagagaagaactcgac
ttgctcttcatacagttacaagacacagccaggcgtgtcgctgaatgtcagcttgactgc
aaggttgatatcgatgtggagagttttgtgcactcgttcagaccggatataatggaggcg
gtgtatgcgtgggcaaaagggtcgaagttttacgagatcatggagatagctcgtgttttc
gaagggagcttgatcagagcgataaggagaatggaggaagttctgcagcagctcatagta
gctgcaaaatccattggagaaacacagcttgaagctaaactagaagaagctgtttccaag
atcaagagagacattgtattcgcagcgtctctttacttgtga
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