Raphanus sativus (radish): 108829137
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Entry
108829137 CDS
T06014
Name
(RefSeq) serine--tRNA ligase, chloroplastic/mitochondrial isoform X1
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
108829137
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rsz01007
]
108829137
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108829137
Enzymes [BR:
rsz01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
108829137
Amino acid related enzymes [BR:
rsz01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
108829137
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
108829137
Prokaryotic type
108829137
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
CCPG1_N
ODF2_C
Tropomyosin
PRR11_2nd
Kazrin
FapA
Lectin_N
DUF3490
Motif
Other DBs
NCBI-GeneID:
108829137
NCBI-ProteinID:
XP_018458299
UniProt:
A0A6J0LF88
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All DBs
Position
5:complement(30749027..30751749)
Genome browser
AA seq
516 aa
AA seq
DB search
MGLHTLRLATTVPMTFSTLTSRLFLKPIPPNTLQKVGVFSRHVHPRKPFLARTFSAPAAV
QEIQPTQASDSSARPQWKASIDFKWIRDNKEAIGINIKNRNSNADLGAVIELYENMVNLQ
KEVEGIREERNNVAKKMKGKLEPSERERLVEEGKSLKESLVTLEEDLAKLQDELQQVGRS
IPNMTHPDVPVGGEDSSAVRKEVGSPREFSFPIKDHLQLGKDLDLIDFDSASEVSGSKFF
YLKNEAVLLEMALLNWTLSEVMKKGFTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGT
DQCLIGTAEIPVGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKA
EMFVLCRPEDSETFHNELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGL
GRYGEISSASNCTDYQSRRLGIRYRPSEPLQTGPKKGKASLPATKFVHTLNATACAVPRM
MVCLLENYQQEDGSVVIPEPLRPFMGGIELIKPKLR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacacacactgagactcgccaccacggttcctatgactttctccacattaacc
tctcgcctcttcctcaagccaattcctcccaatactctacaaaaagttggtgtattttcc
cgccatgttcacccgcgtaagcctttcctcgccaggaccttctccgctcccgccgccgta
caagagattcaacccacgcaagcttcggattcctctgcgaggcctcagtggaaagcctcc
attgacttcaagtggataagggataacaaggaagcgattggaatcaatatcaagaacagg
aactcgaatgctgatctgggagctgtgatcgagctctacgagaacatggtcaatctccaa
aaggaagtcgaggggattcgtgaggaaagaaacaacgttgccaagaagatgaaagggaag
cttgaaccttctgaacgtgagagactcgttgaagaaggtaaaagtctcaaggaaagtctt
gtaactctggaagaagacctcgcgaagcttcaagatgagctccaacaagttgggcggtct
ataccgaatatgactcaccctgatgttcctgttggtggagaggattcatcggcagttaga
aaggaggttggtagtccacgtgagtttagtttcccaatcaaggatcatcttcagcttggg
aaggatcttgatctcattgattttgactctgcttcagaggtaagtggttcaaagtttttc
tatttgaagaatgaagcagtgttattggagatggccctccttaactggaccttatcagaa
gtcatgaagaagggttttactcccctaacaacccctgagatagtgagatcttcgattgtt
gagaaatgcggtttccaacctcgtggagataacactcaggtttattctatagatggaact
gaccaatgtctcattggcaccgctgaaattcccgtaggaggaatccacatggattctatt
cttcttgaatcagcactacctttgaaatacatagcattctctcattgtttccgaactgaa
gctggtgcagctggtgccgctacaaaaggtctttaccgagttcatcagttcagcaaagca
gaaatgtttgtcctgtgccgacctgaagatagtgaaaccttccacaacgaacttattcag
atcgaagaagatctgtttacttctttaggattacacttcaaaacattggacatggccaca
gcagatttaggcgctccagcttaccgcaagtttgacattgaagcatggatgcccggttta
ggaagatatggcgagatatcaagcgcatctaactgcacggattaccaaagccggagactg
ggaatacgttaccgcccatctgaaccgcttcagacgggtcctaagaaaggcaaagccagt
cttccggctactaagtttgtgcacactctaaacgctacagcgtgtgctgtcccaaggatg
atggtgtgtttgctggagaattaccagcaagaagatgggtccgtcgtcatccctgagcct
cttaggcctttcatgggaggcattgagcttattaaacccaagcttagataa
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