Raphanus sativus (radish): 108830193
Help
Entry
108830193 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108830193
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108830193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108830193
NCBI-ProteinID:
XP_018459298
UniProt:
A0A6J0LHF2
LinkDB
All DBs
Position
2:complement(28794231..28796206)
Genome browser
AA seq
428 aa
AA seq
DB search
MNKTFLLLFFVLSCLFQISKLGFCLERKAHKGNNGLKSHRFLSVTSFGAVGNGKTDDTKA
FLKAWKAVCNGGSRDNRQLLVPLGKTFMLNPLTFEGPCKSSSIAFLIRGNLVAPGYTWHA
GNYPAWISFDSINGLVITGGGTIDGRGSVWWRNVQHRPTAMHFNNCNGLHISNLRHLNSP
RNHISLSCSENISLSGLNMTAPSDSPNTDGIDISNCRGVDIHDSMISTGDDCIAINRGSS
YINITGIFCGPGHGISVGSLGENGYFSAVEEVRVKNCTLSNTMNGVRIKTFQNGSGFARK
ISFEDIKMVASQNPIIIEQNYHNRGQNGEVSFEHSNYQSCHVNRFYQTLSGGNGRGVKVS
DIRYTRIHGSSASSEAITMNCEAGLGCVDIVMDHVNIVSAKSGHKVSASCQNVHGKYFDS
LISCQKKH
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagactttcttgttgttgttcttcgtcttgtcatgtttgtttcaaataagcaaa
ttaggtttctgcttagaaagaaaagctcataaaggtaacaatggattgaaaagccatcga
ttcctaagtgttactagtttcggagctgttggcaacgggaagaccgatgatactaaggca
tttctcaaggcatggaaagctgtatgtaacggcggaagtagagacaatagacagcttcta
gtgcctctaggaaaaacgttcatgcttaatcctcttacattcgaaggtccatgcaagtct
tcctccatcgcctttttgataagaggcaatcttgttgcgcctggttacacttggcatgcg
ggaaactaccctgcatggataagttttgacagtatcaatggtctagttatcaccggaggc
ggcaccatcgacggtcgtggttctgtatggtggagaaacgttcagcatcgtcccaccgca
atgcatttcaacaactgtaatggtcttcacatctctaatctccgacacttgaacagtcct
cggaaccacataagtctaagctgctcagagaacatcagcctctcgggtctaaacatgact
gcacctagtgatagtcccaatacggatggcatagacatatcgaactgtagaggagtcgac
atacacgactctatgatttccactggggatgactgcattgccattaacagaggttcttct
tatataaacataaccggcattttttgcggccccggtcatggcatcagcgtaggaagcctt
ggagaaaatggatatttttcagccgttgaagaagtgagagtaaagaactgtactttgtca
aacacaatgaacggtgtccgaatcaagacatttcagaatggatcaggatttgctcgaaaa
atatcatttgaggatatcaagatggtggcttcacagaaccctattatcatcgaacagaac
taccacaaccgaggccagaacggagaagtaagctttgaacatagtaactaccaaagttgc
cacgtaaatcgcttttaccagactctgtctggtggtaatggcagaggcgtgaaagtgagc
gatattcgttacactagaatacacggttcatctgcgagtagtgaagccatcacaatgaac
tgcgaagcgggcttgggatgtgtggacattgtaatggaccatgtgaacattgtttcagct
aaatcaggtcacaaggtgtctgcttcttgccaaaacgttcatgggaagtactttgattca
cttattagctgtcagaaaaagcattaa
DBGET
integrated database retrieval system
