Raphanus sativus (radish): 108830812
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Entry
108830812 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase RZF1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108830812
04121 Ubiquitin system [BR:
rsz04121
]
108830812
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108830812
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
108830812
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108830812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-RING_11
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
CxC4
Rad50_zn_hook
Zn_ribbon_6
zf-Nse
zf-RING_16
zf-HC5HC2H
zf-C3H2C3
DpnI
zf-FPG_IleRS
DZR_2
DUF1272
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
108830812
NCBI-ProteinID:
XP_018459888
UniProt:
A0A6J0LIX3
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All DBs
Position
4:complement(49858606..49861195)
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AA seq
308 aa
AA seq
DB search
MSSGRNTHWCHRCQRGVFLRGRDSLCPYCGGGFVEEIDVTPHSSTLDMLRAHRDVERDPT
FDLVEAFSAFMRSRLADRELTGRLGGSGRSESFSSIAPFLIFSGQANNNNSSVEALLNGS
PAIGITSGNTNAGDYFYGPGLEELIEQLSSGTSHHRGPPPAAKSSIDSLPTIKITQKHLK
SSDSHCPVCKDEFELKSEAKQMPCKHVYHSDCIVPWLVQHNTCPVCRKELPSGGSSSSAQ
SDQNRSTNRRRNIFSSLWPFRSSSSSSTHNRRDTNNTAVAEEGQYNHHHQQHHQQQSNRG
YSGWPFDY
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtggtcgaaacactcactggtgtcacagatgtcaacgtggtgtcttccttcgt
ggtagagactctctctgtccctattgtggaggagggtttgtcgaagaaatcgatgtaacg
cctcatagtagcaccttagatatgcttagagctcacagagatgttgagcgtgatccaacg
tttgatctcgttgaagctttctcagcttttatgagaagccgtttagctgacagagaacta
accggaagacttggtggatctggtcgttctgaaagcttctcaagtatagctcctttcttg
atctttagtggccaagctaataataataatagttcagtcgaagcgttactcaacgggtca
cctgccattggtatcactagtggcaacaccaatgctggagattacttctacggaccaggt
cttgaagaactgattgagcagctttcatcggggactagtcaccatagaggtccaccacct
gcagcaaaatcatctattgattcattaccaaccataaagatcacacagaagcatctcaag
tcgtcagactctcactgtccggtttgcaaagacgagtttgagttgaagtcggaagcaaaa
cagatgccgtgtaaacatgtatatcattctgactgcattgtcccttggctggttcagcat
aacacatgcccggtttgtcgtaaggagttaccatcaggaggatcgtcttcaagtgcacag
agtgatcagaacagaagcacgaatagaagaaggaatattttctctagtctctggccattc
cgctcgtctagctcaagctctacacataaccgcagagacacaaacaatacagccgttgct
gaagaaggccaatataatcatcatcaccaacaacatcatcaacaacaatccaataggggt
tatagtggttggccttttgactattaa
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