Raphanus sativus (radish): 108832193
Help
Entry
108832193 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108832193
09123 Folding, sorting and degradation
03018 RNA degradation
108832193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108832193
03041 Spliceosome [BR:
rsz03041
]
108832193
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108832193
mRNA cycle factors
Stress granule specific factors
108832193
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108832193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
RRM_occluded
RRM_7
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
108832193
NCBI-ProteinID:
XP_018461191
UniProt:
A0A6J0LPB7
LinkDB
All DBs
Position
8:10770307..10773937
Genome browser
AA seq
620 aa
AA seq
DB search
MAQVQTVANGSSAAAAAPAQIGTTSLYVGDLDLNVTDSQLFEAFSQMGQVVSVRVCRDVA
TRKSLGYGYVNFANPQDAARAIQEMNFMPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLD
LAIDHKALHDTFSSFGNIVSCKVAVDASGQSKGYGFVQYADEESAQNAIEKLNGMLLNDK
QVYVGPFLRRQERDSAANKTKFTNVYVKNLGENTTDDDLKKAFSEYGQITSAVVMKDGEG
KSKGFGFVNFENADDAARAVEALNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAA
EKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPSGISKGSGFVAFSTPEEAT
EAMSQLSGKMVESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPPAGPRMPMFPPGAPG
IGQQMFYGQAPPTMIPPQPGYGYQQQLVPGMRPGGGHAPNYFMPMVQQHQQRPGGGRRPG
GIQQFQQQPPMMQHQMHPRGSRNIRYSQGRGGSGGDVPQYDMGNNAMPMPIGTLASNLAN
ASPEQQRTILGENLYPLVEKLEAESAAKVTGMLLEMDQTEVLHLLESPEALEAKVAEAMD
VLRSVAAGGAAEQLASLNLS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcagactgttgcgaacggctcaagtgcggcggcggcggctccggcacag
atcggcacgacgtcgctctacgtgggggatctggatctcaatgtgacggactcgcagctt
ttcgaggcgtttagccagatgggtcaagtggtctcggttagggtttgcagagacgtggcc
actcgcaagtctctagggtatggatacgtcaacttcgccaatccacaagatgctgcgaga
gctatccaggaaatgaatttcatgccgctctatgggaaacccataagggttatgtactct
catcgtgacccaagtgttcgccgaagtggtgctgggaacatattcatcaagaatttggac
ctggccatcgaccacaaggcactccatgacacgttttcaagctttgggaacattgtctcc
tgcaaggtagctgtggatgcttcaggccagtcaaaaggctatgggtttgtgcagtatgcc
gatgaagaatccgcccagaatgctatcgagaaactgaacggcatgttgcttaacgacaag
caagtgtatgtgggtcctttcctcaggagacaagagagagactcggctgctaacaaaacg
aagttcaccaatgtgtacgtgaagaatctcggtgaaaacactaccgacgatgacttgaag
aaggctttcagcgagtatgggcagatcacaagtgctgtggtgatgaaagacggagaaggg
aagtcgaagggcttcggctttgttaacttcgaaaacgctgatgatgctgccagggctgtg
gaggctctcaatgggcacaagtttgatgacaaggagtggtatgttggtagagcccagaag
aagtccgagagggaaacagagctaagggttcgttatgagcaaaacttgaaggaggctgcg
gagaagtttcagagttcaaacttgtatgtgaagaatctggatcctagcatctctgacgag
aaactcaaggagatattttctcctttcggtactgttacgtcttgcaaggtgatgcgggat
cctagtggaatcagcaaaggttctggttttgttgctttctcaactcctgaagaagcaacg
gaagctatgtcacagttgagtggtaaaatggttgaaagcaagccgctctatgttgctatt
gcgcagaggaaggaagacagaagggtcagactacaggctcagttttcccaagtgaggcca
gttgcaatgcagccacctgctggccctcgcatgccaatgtttccccctggtgctccaggt
attggacagcaaatgttctatggccaggcgcctcctaccatgattcctccccagcccgga
tatggataccaacagcagcttgttcctggaatgagacctggtgggggccatgcacccaat
tacttcatgcctatggttcagcaacatcagcagcgtcctggaggaggaagacgccctgga
gggatccaacagttccagcagcaacctcccatgatgcaacaccagatgcatccaaggggt
agtaggaacatccggtactcccaagggcgtggcggtagtggtggtgatgtgcctcaatat
gacatggggaacaacgccatgccgatgcccattggaactttggcttcaaatctggctaat
gcttctccagagcaacagaggacgatactgggtgagaatctgtacccgttggtggagaag
cttgaggcagagtctgcagccaaagtgactgggatgcttttggagatggaccaaaccgaa
gttctccacctcttggagtcaccagaagctctggaggcgaaagttgcagaggcaatggat
gttctgaggagcgttgctgctggtggtgcagccgagcagctcgcttccttgaacctctct
taa
DBGET
integrated database retrieval system
