Raphanus sativus (radish): 108832544
Help
Entry
108832544 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108832544
09123 Folding, sorting and degradation
03018 RNA degradation
108832544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108832544
03041 Spliceosome [BR:
rsz03041
]
108832544
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108832544
mRNA cycle factors
Stress granule specific factors
108832544
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108832544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RRM_5
RRM_3
RRM_Nup35
RRM_RdRP1_2
RBD_DGKtheta
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
108832544
NCBI-ProteinID:
XP_056864955
UniProt:
A0A9W3DMB3
LinkDB
All DBs
Position
4:33816100..33819331
Genome browser
AA seq
640 aa
AA seq
DB search
MAQVQAQAPSSSSPPPPVTDGAVASDGVNLGAMCSLYVGDLDFNVTDSQLYDYFTEVCQV
VSVRVCRDTATNTSLGYGYVNYTNIDDAEKALKKLNYTSLNGKMIRVTYSSRDSAARRSG
IGNLFIKNLDKSVDNKTLHETFSSCGSIVSCKVATDHMGQSKGYGFVQFESEDSAKSAIE
KLNGKILNDKQIFVGPFLKKEERESAADKMKFTNVYVKNLSETTTDDELKTTFGQYGGIS
SAVVMRDGDGRSRCFGFVNFENAEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSR
RYEQGGRETGNSFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGASKGSGF
VAFSAASEASRVLNEMNGKMVSGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGMGPRM
PMFPGGAPGLGQPMFYGQGPPQMMPHQAGFGYQPQMVPGMRPGYFGPMMQPGQQGPRPGG
RRSGDGPMRHQPQQPMPYMQPQMMAGGRGHRYPRGRNMPDGPMPGGMVPFPYDINGVPIM
PAGALASSLAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPE
ALNAKVSEALDVLRNVNQPSEGKSGSPSDMMASLSINDHL
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggttcaggctcaggctccttcgtcatcttctcctcctcctccggtcacagac
ggcgcggtggcttccgacggagtgaatctcggcgctatgtgttcgctctacgtcggagat
ctggatttcaacgtgaccgattctcagctctacgactatttcaccgaggtgtgccaagtc
gtgtccgttcgcgtttgccgtgacaccgccaccaacacttctcttggatacggctacgtc
aactacaccaacatcgatgatgctgagaaggcactgaagaagctgaactacactagtcta
aatgggaagatgattagggttacttactcttctcgtgactctgctgctcgtagaagtggg
atcggcaacttattcatcaagaatctcgacaagtcagttgacaacaagacgcttcacgag
acgttttcatcgtgtggcagtattgtgtcctgcaaggtcgctactgatcacatgggtcag
tccaaaggatacggctttgtgcaattcgagagcgaggactcggctaagagcgctattgag
aagctcaacgggaagatactgaacgataagcagattttcgttggaccgtttctcaagaag
gaggagagagagtccgctgctgataagatgaagttcaccaatgtctacgtgaagaatctc
tcggagacgactactgatgatgagctgaagactacttttggtcagtacggtggtatctcg
agcgctgtggtgatgagggacggagatgggaggtcgaggtgtttcgggtttgtcaacttc
gagaatgctgaagatgcggctcgtgctgttgaggcacttaacgggaagaagtttgatgat
aaggagtggtatgtcggtaaagctcagaagaagtctgagagggagcttgagttgagcaga
agatatgaacaaggaggaagggagacgggaaacagtttcgatgggttgaatctgtatgtt
aagaaccttgatgatactgtcacggatgagaagttgcgtgagctgtttgctgagtttggt
actattacttcctgcaaggttatgagagaccctagtggtgctagcaaaggatcagggttt
gttgccttctctgctgctagtgaagcttctagagtgctgaatgaaatgaatggtaaaatg
gttagtggcaaaccgttgtatgttgctcttgcacaaaggaaagaagaaagaagggctaag
ctgcaggcacagttttctcaaatgagaccggcttttatccccggtatgggtcctcgtatg
ccaatgttcccaggtggtgctccaggtcttggacaaccgatgttttatggtcaaggacct
ccacaaatgatgcctcaccaggctggatttggatatcagcctcagatggttcctggaatg
aggccaggctattttgggccgatgatgcagccaggtcagcaagggccacgaccaggtgga
agacggtcaggtgatggacccatgcgccaccagcctcagcaaccaatgccatatatgcag
ccacagatgatggcaggaggacgtggacaccgttaccctcgtggtagaaacatgccagac
ggtccaatgccaggaggaatggttccatttccttatgacattaatggagtgcctattatg
cccgctggtgcattggcttcttcccttgctcaagcctcacctgctcaccaaagaacaatc
ctgggtgagactctatacccattagtgaacaagatagagcacgagaatgctgccaaagtg
acgggtatgcttttggagatggatcagacagaagtgttgcatctgatagagtcaccagag
gctctaaatgctaaagtttcagaggcgttggatgtgttgagaaacgtgaatcagcctagt
gaaggcaagagtggtagcccaagcgatatgatggcttcactttccattaatgatcacttg
tga
DBGET
integrated database retrieval system
