KEGG   Raphanus sativus (radish): 108832938
Entry
108832938         CDS       T06014                                 
Name
(RefSeq) uncharacterized protein LOC108832938
  KO
K12828  splicing factor 3B subunit 1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108832938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108832938
   03036 Chromosome and associated proteins [BR:rsz03036]
    108832938
Spliceosome [BR:rsz03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108832938
 Complex B
    108832938
 Complex C
   U2 SnRNP specific factors
    108832938
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108832938
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N HEAT_Maestro T4_baseplate
Other DBs
NCBI-GeneID: 108832938
NCBI-ProteinID: XP_056866642
UniProt: A0A9W3DRW0
LinkDB
Position
5:complement(33140711..33144893)
AA seq 1234 aa
MADINHEIAKTQEERRRLESDLAASSSLTSVNFDRDLYGGNERDDSYSKSIAPNDDEEDP
NLDTKGYLVAQRLASYTAPKSILNDLARLQDDDDDEDGGGFKPRQTIAEREGEYRNRRLN
RVLSPDRVDPFAMGEKTPDPSVRTYSDHMRETAVQREREETLRLVAKKKKEAEEEASKKR
KKCDHNEGDGGGAKKAKASASDWDVADSTPGRVSTGTRSRNRWDDPTPGRVTDSDATPGG
GVTPGATTPTPKRQRSRWDETPATMGSATPMAGVTPAAFYAPGVTPFGGIDMATPTPSRI
NLGGAMTPDQYNQARWEKDIEERNKPLSDEELDAMFPTAGYKVLAQPASYVPIRSPARKA
LGTPTPMTTPGYVIPEENRRQQFDVPQEVPGGLPFMKPEDYQYFAALLNEENEEELSPDE
QKERKIMKLLLKVKNGTPAQRKTALRQLTDKARELGAGPLFNKILPLLMQPTLEDQERHL
LVKVIDRILYKLDELVRPFVHKILVVIEPLLIDDDYYARAEGREIISNLSKAAGLATMIS
AMRPDIDNADEYVRNTTARAFAVVASALGIHALLPFLKAVCQSKRSWQARHTGIKIVQQI
AILIGCAVLPHLSSLVGLVEHGLSDENLKVRTITSLSLAALAEASAPYGIESFDSVLIPL
CKGIRSHRGKVLAAFLKAIGSIIPLMEAGHVRYYTKEAMLILVREFQSPDEEMKKIVLKV
VKQCVSTEGVEADYIRSDVLPDFFKHLWVKRMALEKRNYKSLVETTVEIANKVGVVDIVE
RLVNGLKDGSEMYRRMVMEAIDKVVTNLGASDIEGRLEELLIDGILYAFQEQTSDDANLM
LNGFGAVVNGLGQRVKPYLPQICGTIKWRLTSKSAKVREQAADLISRIAVVMKQCGEEQL
MGHLGVVLYEYLGEEFPEVLGSVLGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK
VQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGP
QDVLATLLNNLRVQERQNRVCTTVAIAIVAETCSPFTVLPALLNEYRVQELNVQNGVLKS
LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHIALGVAGLGCEDALIH
LLNLIWPNIFETSPHVINAVMEAIEAMRVALGPTVILNYCLQGLFHPARKVREVYWKIYN
TLYIGAQDTLVAAYPVLGDEQINVYSRPELSMFV
NT seq 3705 nt   +upstreamnt  +downstreamnt
atggcggatataaatcatgagatcgctaagactcaagaggagagacggaggttagaatca
gacctcgctgcttcttcttccctcacgtctgtcaatttcgatcgagatctctacggaggt
aacgaacgtgacgattcctactcgaaatccatcgcacccaacgatgatgaggaggatccc
aacctcgacaccaaaggctatcttgttgctcaacgtcttgcgtcttacaccgctcccaag
tctatcctcaacgacttggctcgtcttcaagatgatgacgacgacgaagacggtggagga
ttcaagccgaggcagactattgcggaacgcgagggtgagtaccggaacaggaggcttaat
cgtgttctctctccggatagagtcgatccgtttgctatgggagagaagacgcctgatccg
agcgttagaacttatagcgatcatatgagggagacggctgtgcagagggagagggaagag
actctgaggcttgttgcaaagaagaagaaggaagcagaagaagaagcttccaagaagagg
aaaaagtgtgatcacaacgaaggagacggtggtggcgcaaagaaagctaaagcatcagcg
tcggattgggatgtagctgattcaactccagggagagtctctactggaacaaggagcagg
aacagatgggacgatcccacgcctggtcgtgtgactgattctgatgcaacaccaggtggt
ggtgttactcccggtgcaacgacgcctacgccgaagcgtcaacgttctaggtgggacgag
acaccagccactatggggagtgctacacctatggctggagtgactcctgctgctttttac
gcccctggtgtcactccattcggtgggattgatatggctactccaactccgagtcggatt
aatctgggtggtgctatgactcctgatcagtacaatcaggcgaggtgggagaaggatatt
gaagagagaaacaaaccattgagtgatgaagagcttgacgccatgtttcctacagcagga
tacaaggttttggcccagcctgcttcttatgttcccatccgatcccctgctaggaaggct
ctaggaaccccgacgcccatgacaactcctggctacgttattcctgaggaaaaccgcagg
cagcagtttgatgttccccaggaagttcctggtggcctgccgtttatgaaaccagaggat
tatcagtatttcgcagcgttgttgaatgaagagaacgaagaagaactgtctcctgacgag
cagaaagaacgcaagataatgaaactgttgttgaaggttaaaaacggaacccctgcacag
aggaaaacagctttgaggcagcttactgataaggctcgtgagcttggcgctggtcctttg
tttaataaaattttgcccttgctcatgcaacccactttggaagatcaggagaggcatctt
ttggtgaaagtgattgataggattctttacaaacttgatgagcttgtaaggcctttcgtc
cacaaaattcttgttgttatcgagcctctgttgatcgacgacgattactatgctcgtgca
gaagggagagaaattatttcaaaccttagcaaagcagctggtttagccactatgatttca
gctatgcgtccggatattgataacgctgatgaatatgtgaggaacacaacagctagggct
ttcgctgtggttgcttctgctcttggaatccatgcgctcttgccgttcctgaaagctgtt
tgccagagtaagaggtcatggcaggcgagacacactggaattaagattgtgcagcagatt
gcgatactaattggctgtgccgttttgcctcacttgagttctctagtaggacttgtcgaa
cacggtctcagtgatgaaaacctgaaggtgaggactattacgtctttgtcactggctgct
ctcgccgaggcttctgctccttatggtattgagagcttcgactctgttcttatacctctg
tgtaaaggtattaggtctcaccgcggcaaagtcttggctgcgttcttgaaggcgattggt
tctatcatccccttgatggaagctgggcatgtgagatactatacaaaagaagcgatgctg
atcttggttagggagtttcagtctcctgatgaggagatgaagaagattgtcctcaaggtg
gtgaaacagtgtgtaagtactgaaggtgttgaagcggattacatccgcagcgatgttctg
cctgactttttcaaacatttatgggttaagagaatggctctggaaaaaagaaactataag
tcgcttgttgaaactactgttgagattgcgaacaaggttggtgttgtagatatcgtggaa
agattggttaatggacttaaagatgggagtgagatgtaccggcgtatggttatggaagcc
attgacaaggttgtcacaaacttgggagcatcagatattgaggggagattggaggagctg
ctcatagatggcattctttatgcgttccaagaacagacaagcgacgatgctaatttgatg
cttaatggattcggtgctgtagtgaatggacttggtcagcgagtaaagccttaccttcct
cagatctgtggtaccatcaagtggcggttaacctccaagagtgcaaaggtaagagagcaa
gcggctgatctcatctctaggattgctgttgttatgaagcaatgtggagaggaacagttg
atgggacatctcggtgttgtcttgtacgagtatctcggagaagagtttcctgaagtcttg
ggatcggttcttggagctttaaaggctatcgtcaatgtgattggtatgacaaagatgacg
cctcctattaaggatctgcttccaagactgactccgattttgaagaacagacacgagaaa
gtgcaagagaattgcatcgaccttgttggtaggattgctgatcgtggtgctgagtttgtt
ccagcaagagagtggatgagaatatgtttcgagcttcttgaaatgctcaaagctcataag
aaaggtattcgccgtgccactgtcaacactttcgggtacatagccaaagccattggacca
caagacgtgctagccacgttactgaacaatctcagagtccaagaacgccagaaccgtgtt
tgcaccactgtcgcgatcgccatagtcgctgaaacatgctctccgtttaccgtattaccc
gcgttgttgaacgagtaccgtgttcaagagctcaacgtccaaaacggtgtcctgaaatcc
ctctctttcctcttcgagtacattggagaaatgggcaaggattacatatacgcagtcacg
cccttgctcgaagacgctctcatggacagagatttggttcacagacaaaccgcggcttca
gcggtgaaacacatagctctaggtgtagctggtctgggttgtgaagacgctttgattcac
ctgcttaacttgatctggcccaatattttcgaaacatctcctcatgtcatcaacgctgtg
atggaagccattgaagcaatgagagttgcattaggtccaacagttatactgaactattgc
ttgcaaggtttgtttcatccggctcgaaaagtccgtgaagtctattggaagatatacaat
acgctttacattggtgctcaagacacgcttgttgctgcttacccggtccttggggatgag
cagatcaatgtttatagccgacccgagttatctatgttcgtctga

DBGET integrated database retrieval system