Raphanus sativus (radish): 108833009
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Entry
108833009 CDS
T06014
Name
(RefSeq) chloride channel protein CLC-d isoform X1
KO
K05016
chloride channel 7
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108833009
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108833009
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rsz04040
]
108833009
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108833009
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
108833009
Ion channels [BR:
rsz04040
]
Chloride channels
Chloride channel (CLC)
108833009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Voltage_CLC
CBS
Motif
Other DBs
NCBI-GeneID:
108833009
NCBI-ProteinID:
XP_018461963
UniProt:
A0A6J0LPQ4
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Position
4:10738020..10743527
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AA seq
793 aa
AA seq
DB search
MLSNHLQNGIESDSLIWSRVPDSDDASSTDGVGLLSSPRDGGAAGVDSLDYEVIENYAYR
EEQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAGWKFALTFAIIQKSYF
AGFIVYLVINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFG
SIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGC
AAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGICGHF
GGGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLLGALFNQLTYYMTSWRRNYLHKKGNR
VKIYEACIISCLTSAISFGLPLLRKCSPCPETADSGIECPRPPGMYGNYVNFYCKTDNEY
NDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAVPAGQFVPGI
MIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKL
LPLIMLVLLVSKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQSQKVISL
PRVIRVADVASILRSNKHNGFPVIDHTRSGETLVIGLVLRSHLLVLLQSKVDFQHSPLPC
DPSARPIRHRFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTK
VYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGRYSETATR
TDTGRPLLDDLLG
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgaatcatctacagaacgggatcgaatccgatagcctcatctggtcacgcgtc
cctgattccgacgatgcttcttccaccgacggcgtcggcttactcagctccccccgtgac
ggcggcgccgccggcgtcgatagtctcgattacgaggttatcgagaattacgcctacaga
gaagaacaggcgcatcgagggaagctctacgttggttactacgtcgccgtcaaatggttc
ttctcgttactcatcgggatcggaactggattggctgctgttttcatcaatctctcggtc
gagaatttcgctggatggaagtttgctctcactttcgccatcattcagaagtcttacttt
gctgggtttatagtttacctcgtcatcaatctagtcttggtgttttcttccgcgtatatc
attacacagttcgctcctgctgctgctggctctggcattcctgagattaagggttatctc
aatggaattgatattcctggtacattgctctttagaacccttatcggaaagatatttgga
agcattggatctgttggaggtggtttagccttggggaaagaaggcccccttgtacatacg
ggtgcttgcattgcatctttgcttggtcagggtggatctacgaaatatcatttgaattct
agatggccgcagctttttaagagtgacagagatcgtcgtgatcttgtcacttgtggatgt
gcagctggagttgctgcagcttttagagctccagttggtggagtgttatttgcattagag
gaggtcacatcatggtggagaagtcaacttatgtggcgtgtctttttcacttctgctatc
gtggctgttgtggtgcgtactgccatgggttggtgcaagagtggaatatgtggacacttt
ggtggaggtggtttcattatatgggatgtatcagatggtcaagatgactactacttcaag
gagctactgccaatggctgtaattggagttatcggaggcctacttggggcattatttaac
caacttacatactatatgacatcttggcgtcgaaattatttgcacaagaaaggaaatcga
gtgaagatatatgaagcatgcatcatctcttgcttaacttcagcaatctcgtttgggctg
ccactcctaaggaaatgcagtccatgccctgaaacagctgactctggtattgaatgtcca
cggcctcctggaatgtatgggaattacgtaaatttctattgcaaaacggataacgagtac
aatgatctcgccacaattttcttcaatactcaggatgatgctataaggaatttgttcagc
gcaaaaacaatgcgagaattcagtgctcagagtctactgacttttttggctatgttttat
acattagcagtggtgacatttggcactgctgttcccgctggccagtttgtccctggaata
atgataggatcaacgtatgggcgccttgtaggcatgtttgtggtcaggttttacaagaag
ctcaacattgaagagggaacttatgctttgctgggagctgcttcatttcttggaggctcg
atgcggatgactgtatctttatgtgttatcatggttgaaatcacaaacaacctgaaactt
ctgcctcttataatgttggttcttctcgtttcaaaggccgtgggtgatgctttcaatgag
ggattgtatgaagtacaagcacgccttaagggcattccgttactggaatcaagacccaag
tatcatatgcggcaaatgatagcgaaggaagcatgccaaagtcagaaggtaatttcttta
cctcgagttatcagggttgcagatgtcgcttcaattttgcgcagcaacaaacacaatgga
tttccagtgatcgaccacacgagaagtggtgaaacgcttgtcattgggttagttcttcgg
agtcacttgcttgtactccttcaatctaaggtggattttcaacatagtcctctgccttgt
gatccaagtgccagaccgatcaggcacagatttagcgagtttgctaaacctgtttcatct
aaagggttatgcatagaggatatacatctaacttcagatgatttagagatgtacatagat
cttgctccgtttttaaacccgtctccatacgttgttcctgaagacatgtcgttgacaaag
gtatacaaccttttccggcaacttgggttgagacatctatttgttgttccacgtccttct
cgtgtgataggcttgatcacaagaaaggatttactaattgaggaaaacggggaatcatca
gctgttgaactccaacagtcaactagtgtaagaggtcggtacagtgagacagcaacgcgg
acagacaccggacgtccgcttctagacgatcttttaggctag
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