Raphanus sativus (radish): 108833814
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Entry
108833814 CDS
T06014
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108833814
03036 Chromosome and associated proteins [BR:
rsz03036
]
108833814
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108833814
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108833814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
HTH_44
Spt6_S1
HHH_9
HHH_3
Tex_N
Tex_YqgF
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
108833814
NCBI-ProteinID:
XP_018462715
UniProt:
A0A6J0LR04
LinkDB
All DBs
Position
7:9973758..9980763
Genome browser
AA seq
1589 aa
AA seq
DB search
MSRNALSDEEDDHELEDEDGEPVHGDPVDNADNDDDDDEEEEEGDDEFENDGFIVDDEEE
EEDDEEEELKKNSDEEKQKKKKKRRKMDEDLDEDDYLLLQDNDVKFQKRKFKRLKKAQRE
REGGQGGSSDDDFDRSGGARRSAEDKIKDNLFDDVDDLPDDVGDEEELPVEEDVVGSEDE
MADFIVDEDGNGQPRRGNNKKRKYGQGSDMSAIHDANEIFGDVGELLSLRKKGLASSERM
ERRLEDEFEPTILSEKYMTGKDDEIRQVDIPERMQISEDSTGSPPVDELSIEEESNWIYA
QLTSLLKDPDGLHIFGGQGFSVNKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDSSD
ISDLDTEKKAETKWHKVLWMIQDLDKKWLLLRKRKTALHGYYTKRFEEESRRVYDENRLN
LNQYLFESVMKSLKVAETEREVDDVDSKFNLHFPAGEVGVDEGQYKRPKRKSQYSICSKA
GLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFVCAMFENSQAVLKGARH
MAAVEISCEPSVKKYVRGIYMENAVVSTSPTAEGNGIIDSFHQFAGVKWLREKPLSKFEG
AQWLLIQKAEEEKLLQVTFKLPENYMNKLVSDCYEHYLSVGVSKYAQLWNEQRKLILEDA
LHAFILPSMEKEARYLLTSRAKSRLLSEYGQALWDKVSAGPYQKKEMDISSDEEAAPRVM
ACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQP
HVVALGAVNLACTRLKDDIYEVIFQMVEEKPRDVGQMGELTIVYVDESLPRLYENSRISG
EQLPQQSGIVKRAVALGRYLQNPLVMAATLCGPGREILSWKLHPLEGFLQVDEKYGMVEQ
VMVDITNQVGIDVNMAASHEWLFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMHG
LGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGDS
NDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKNRENKKETYSNIMRELSCGFQDWRIPF
KDPTADEEFYMNSGETEDTIAEGRIVQATVRRLQGGRAICVLDSGLTGMLSKEDFADDGR
DIVELSDRLKEGEILTCKIKSIHKERYQVFLICKESEMRNNRHHQRNQNLDPYYHEDRNS
LLIEKEKARKEKELVKKHFKSRMIVHPRFQNITADQATEYLSDKEFGESIVRPSSRGLNY
LTLTLKIYDGVYAHKEIVEGGKESKDITSLQRIGKTLTIGDDTFEDLDEVMDRYVDPLVS
HLKTMLNYRKFRKGTKSEVDELLRAEKSENPARIVYCFGISHEHPGTFILSYIRSTNPHH
EYVGLYPKGFKFRKRMFESIDKLVAYFQRHIDDPLQETAPSIRSVAAMVPMRSPADRGSQ
SEGGWKGNSDRSYAPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRGRGRGRRDNNSEREDG
NGDWGNNSTGAGDGGWGSSGGGGWGSESGGKKSDGGGGWGSESGGGGGGWGNESGGKKSS
GEDGGWGKESSGKKSGEDGGWGNSGGGGW
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggaacgctctttccgacgaagaagacgaccacgagctcgaggatgaggatgga
gagccagttcatggagatcctgtcgataatgctgacaacgatgatgatgatgacgaggag
gaggaagagggtgatgatgaatttgagaacgatgggttcatagtggatgatgaagaagag
gaggaggatgacgaagaagaagaattaaagaaaaatagcgatgaggagaagcagaaaaag
aagaagaaacgaagaaaaatggacgaagatcttgatgaagatgactatctgcttctccaa
gacaacgatgtcaaattccaaaagaggaagtttaagaggttgaagaaagctcaaagggaa
agggaaggtggccaggggggatcatctgatgatgatttcgacaggagtggtggagctaga
agaagcgccgaggacaagatcaaagacaatctgtttgatgatgttgatgatttgcctgat
gatgtaggcgatgaggaggaattaccggtggaagaagatgtagttgggagcgaggatgaa
atggccgatttcatcgtagatgaagatgggaatggtcaacctaggaggggaaacaataag
aaaaggaagtatgggcaaggatcagatatgagtgctatacatgacgctaacgaaatattt
ggtgatgtcggcgagctattgtcacttcgtaaaaagggtttggcatctagtgaaaggatg
gaacgaaggctcgaagatgagtttgagccaactattctttctgaaaagtacatgactggg
aaagatgatgaaatccgccaagttgatattcccgagaggatgcagatatctgaagacagc
actggaagccctcctgttgatgaacttagcattgaggaagagagcaattggatatatgcc
caacttacttcgctgctaaaagatcctgatggacttcatatttttggaggacaaggtttc
tcggttaacaaggatgatattgcaaagtttttggagcttcatcatgtgcagaaattagag
ataccatttatagctatgtaccgaaaggagcagtgccggagcttgttggactcttctgat
attagtgacctcgatacagagaagaaagctgagaccaaatggcacaaggtcctctggatg
attcaggacttggataagaagtggctccttcttcgaaaaaggaaaacggcgttgcatggt
tactatacaaaacgtttcgaagaagagtcaaggagggtctatgatgaaaataggcttaac
ctaaatcagtatctttttgaatcagtcatgaaatctcttaaagtggcagaaacagagaga
gaagttgatgatgtagattccaagttcaacttgcattttcctgccggtgaagttggtgtt
gatgaagggcagtacaagaggccgaagcgaaaatcacaatatagcatctgcagcaaagca
gggctctgggaggttgcaaacaaatttggttatagcgcggagcagttgggacttgcatta
tccctagaaaaattggttgatgagctcgaggatgcaaaggaaacaccagaggagatggct
atgaactttgtgtgcgcaatgtttgaaaattctcaagctgttcttaagggcgcacggcat
atggctgctgttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatttat
atggagaatgcagtagtctcgacaagtccaacagcagaggggaatggaataatagactct
ttccatcagtttgctggggttaaatggttacgtgaaaagccattgagcaagtttgagggt
gcgcagtggcttctcattcagaaggcagaagaggagaaacttcttcaagtaaccttcaag
ctgcctgagaattacatgaataagctggttagcgactgctatgaacactatctaagtgtc
ggtgttagtaagtatgcccaactctggaatgagcaaagaaaattgatactggaggatgca
cttcatgcttttattttgccatcaatggagaaagaagcaagatacttgctaactagcaga
gcaaagagtaggttgctttcagagtatggacaggctttgtgggataaggtgtctgcaggg
ccatatcagaagaaagaaatggacattagctcagatgaggaagctgcaccgagggtcatg
gcatgttgttggggccctggaaagccgccaaatacatttgtgatgctggattcatctgga
gaggtgcttgatgtgctttatgctggatccctcacactgcgatctcaaaatgtcaacgac
caacaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaaccg
catgttgtggctctaggagctgtcaatttggcttgtacacgtctgaaggatgatatttat
gaggtcattttccagatggttgaagaaaaacctagagatgttgggcagatgggtgaatta
accattgtttatgtagacgaatcacttcctaggctatatgaaaattctcgaatctcgggc
gaacagctacctcaacagtctgggatcgtgaaacgtgcagttgctcttggacgctacctc
cagaatcctctagtaatggcagcgactttatgtggtccaggccgggaaatattgtcttgg
aagcttcatccattggagggttttcttcaggttgacgagaagtacgggatggttgaacag
gttatggttgacataacaaaccaggttggaatcgacgttaatatggcagctagccacgag
tggcttttctctcctttacagttcatttctggacttggacctaggaaagctgcatccttg
cagaggtcgcttgtaagagctggttcgatatttgtccgcaaggacctgataatgcatggg
cttggtaagaaagtttttgtaaatgcagccggtttcttgcgcatcaggaggagtgggctt
gctgctagcagcagtcaatttatcgatttattggatgataccagaatacatccggaatcg
tatggtcttgctcaagaattggcgaaagatatctatgaccaggatgttagaggtgattcc
aatgatgacgaggatgcgatagagatggcaatagagcatgtgagagatcggccaggctct
ctgagaaaagttgtccttgaggagtatcttgcaagcaagaaccgggagaacaagaaggaa
acttacagtaatatcatgagagagttaagctgtggattccaggattggcggatacctttt
aaagatccaactgcagatgaagagttttatatgaattcaggtgaaactgaagacaccata
gctgaaggcaggattgtccaggccactgttcggagattgcagggtggaagagccatatgt
gtattagattctggactaactgggatgctctcgaaggaggatttcgcagatgatgggaga
gatattgtggagctgtcagaccgactgaaagaaggcgaaatccttacatgcaagatcaaa
tcgattcacaaggagaggtaccaagtgttccttatatgcaaggagagtgagatgagaaac
aataggcaccaccagcggaaccagaatctggatccgtattaccatgaggatagaaacagt
ctcctgattgaaaaagagaaagctcggaaagaaaaggagcttgtgaagaagcatttcaag
tctcggatgattgtccatccacgtttccagaacatcactgctgatcaagcaaccgagtat
ttatctgacaaagaatttggagagagcattgttcgtccaagctctcgaggactcaattac
ttgacattgacgctcaaaatttacgatggagtctatgctcacaaggagatagttgaaggt
ggaaaagaaagcaaggacatcacgagcctacagcgtattgggaagacgctgacaattgga
gacgacaccttcgaggatttagatgaggtcatggatcggtatgttgaccctctggtctct
cacctcaagacgatgcttaactacaggaagttccggaaggggacaaaatcagaagtagat
gagcttctaagggcagagaagagtgaaaaccctgcgaggatagtttactgttttgggatc
tcacacgagcatcctggtacctttatactgtcctacataaggagcaccaatccgcatcac
gagtacgtcggtctgtaccccaagggattcaagttcaggaagagaatgtttgaaagcatt
gacaagcttgtggcctacttccagaggcatattgatgacccgttgcaggaaacagctccg
tcgatcaggtctgttgctgcaatggttcccatgagaagcccagcggaccgtggttcgcag
agtgaaggaggctggaaaggtaactcagatcgctcttatgcaccaagaccagggagaggc
ggtgagtacagaaacggtggtggacgtggtgatgggcatccaagtggagcgccaaggcct
tatggtggtcggggtagaggcagaggaaggagggataataacagtgagagagaagatgga
aatggagattggggcaataacagcaccggagctggggatggaggctgggggagtagtggt
ggtggtggttggggaagcgagtctggcggtaaaaagagtgacggtggaggcggatggggt
agtgagtctggaggtggtggtgggggttggggaaatgagtctggcggtaaaaagagtagc
ggtgaagacggcggttgggggaaggagtctagtggaaaaaagagcggtgaagacggcggt
tggggaaatagcggtggtggcggttggtga
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integrated database retrieval system
