Raphanus sativus (radish): 108833871
Help
Entry
108833871 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 2 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108833871
09123 Folding, sorting and degradation
03018 RNA degradation
108833871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108833871
03041 Spliceosome [BR:
rsz03041
]
108833871
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108833871
mRNA cycle factors
Stress granule specific factors
108833871
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108833871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_10
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
108833871
NCBI-ProteinID:
XP_056852797
UniProt:
A0A9W3CMC7
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MWGSDSKPANLLVKRKLKDDLVTKAMILKKHKEEVVVKKKTILVRGLSKDAGIADIIDFF
KDVGQVVVRVQLVVHHGFRKTRKYGFVKFASSNEAEKALQKIKNLPGPQTFAQIFPYVHI
IPRYCKDHKVWNKDFILREEDDTPPPKFVENVLFVSNLSPQTKVFHIIDYFSPLGQVVSV
RLVVNPEGKHVGYGFVELGSAYQAHKALEKMNGEYLLDHKIFIDVAKLPPYRLLPEYNFA
EKLCYEDYLRRGILVRDKDETGERLYQEAVAVRNKTIFVNNLSPPTKIQDLIDILKDVGK
VVNVRLLIDCEGNQTGDGYVEFASAEEAEKALEKKYLDDQGIFLFSADSLPEFQHPKYCI
DHKVWYEDYLGRENRLIEDDDVVEEGFDETHDFAEEVAIRKKTLFVYNIPPGIRTYNLFD
YYKNVGHVCRVRLVVNHEGDHVGCGFVEFASAEEAMTALLFYQRSSRALQILSDVVEMAP
YPIRPKYMRAEKLWNEEYLRQESLRTEEDYLERQEVTELFCGKKKTFSDDD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtggggctctgattcgaagccagctaatttattggtgaagcgtaagctgaaagatgat
ttggtgaccaaagctatgattctgaagaaacataaggaggaggttgtcgtaaaaaagaaa
acgatcttggttcgcggtctctctaaggacgctgggatagcagatatcatcgatttcttc
aaagatgttggacaagttgttgttcgtgttcaacttgttgttcaccacggtttcaggaag
actagaaaatatggttttgttaagtttgcttcttctaacgaagcagagaaggctctccaa
aagattaaaaatttgcccggtccccagacttttgctcagattttcccttatgtgcacatc
atacccaggtattgcaaagatcacaaagtctggaacaaagatttcatcctacgagaagaa
gatgacacacctcctcccaagtttgttgagaacgttctctttgtttccaacctctctcct
cagactaaagtatttcatatcatcgattacttcagtcctcttggacaagttgttagtgtt
cgacttgttgtaaatcccgagggcaagcatgtaggctatggctttgtggagcttggttct
gcttaccaagcacataaggcgctggaaaaaatgaatggtgaatatttgctggatcacaag
atttttattgacgtagctaagctgcctccctaccgtctcctacccgagtacaactttgca
gagaagctctgttacgaagactatcttcgccgagggatccttgtgagagacaaagatgag
acaggagaaagactttatcaagaggcagttgctgtaagaaataagacaatctttgtcaac
aacctctctcccccaactaaaatacaagatctcatcgacatattaaaagatgtcggaaaa
gttgttaatgttcgacttcttatagactgtgagggcaaccaaactggcgatggctatgtt
gagtttgcttctgctgaagaagcagagaaggcgttggaaaagaagtatttggacgatcaa
ggaatttttcttttttcggctgatagtttgccagagtttcagcatcccaagtattgcatc
gatcacaaggtttggtacgaagactaccttggacgagaaaaccgtctgatcgaagatgat
gatgtagtggaggaaggatttgatgaaactcatgattttgctgaggaagtagccataaga
aaaaagacactcttcgtttacaatatccctcccggaatacgaacatataatctctttgat
tactacaaaaatgttggacatgtttgtcgtgttcgacttgttgtgaaccacgagggtgat
catgtgggctgtggctttgttgagtttgcttctgctgaggaagcaatgacagcgttgctc
ttctaccagaggagtagtagagctctgcaaattctctccgacgtggttgagatggctcca
taccctatccgacccaagtacatgcgtgcagagaagctctggaacgaagagtaccttcga
caagaaagccttcggacagaagaagattatctggagagacaggaggtaaccgaattattc
tgcggtaagaagaaaaccttctctgatgatgactga
DBGET
integrated database retrieval system
