Raphanus sativus (radish): 108834345
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Entry
108834345 CDS
T06014
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108834345
09123 Folding, sorting and degradation
03018 RNA degradation
108834345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108834345
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108834345
03009 Ribosome biogenesis [BR:
rsz03009
]
108834345
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108834345
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108834345
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108834345
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
RNases
108834345
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108834345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
SPATA1_C
Motif
Other DBs
NCBI-GeneID:
108834345
NCBI-ProteinID:
XP_056850424
UniProt:
A0A9W3CFY2
LinkDB
All DBs
Position
2:complement(2134342..2140856)
Genome browser
AA seq
1027 aa
AA seq
DB search
MGVPAFYRWLAEKYPLIISDVVEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
SAKDASDAAAEEEKLREEFEREGRKLPPKINSQVFDSNVITPGTEFMGVLSIALQYYVHL
RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHMAADCEGKAKKRAGEFDEKGDGFVKKPY
QFLHIWILREYLEYEMRIPNPPFEVDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAIGSFEDQIFQKRTRLHQRQAERIKGD
KARKRRMDDAAPTFQPESLVPVERFTGSRLASAPAPSPFQSSDAAPHQKARRLSSSGSSI
GAALVDVENSLEPDENENKEELKTKLKELIREKSDAFNSDTHEEDKVKLGEPGWRERYYE
EKFSVSTIEEMEKLRKDVVLKYIEGLCWVMHYYIEGVCSWQWFYPYHYAPFASDLKDLGA
LDIKFELGTPFKPFNQLLGVFPAASAHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKR
YSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELIFSLDN
HCRQLSARERVDLKVQIKPELSDGMNGYLTPCSGETHPPIFRSPMEGMEDILANQVICCI
YRLPDAHSHITRPPPGVIFPKKIVNIGDLKPPPALWHEDNGRRPMHNNNNNHYNNNNNHY
NNNNNHGRQNPPGSLSGRHLGDAAHRLVTNSLHNRTADAHTQHHHHGHAYNQPPYVPPVP
YQYGGYNAAPHGVQDYAPPQSRQAPPYQSRGGYQPRGTSGRFPSDPYPVQQSRGGHHHRD
NRGGGGYSGGYNQRQQQQQQHWDGGEEHYNQRGGYSGQHHRQQGGDRNRRGGGSHHHHHD
QGPRHRY
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccggcgttttaccggtggttagcggagaagtatccgttgataatatcagac
gtcgtcgaggaagagcccgttgagatcgaggggatcaagatcccggtggacaccagtaaa
cctaaccctaacaatctcgaatacgacaatctttaccttgacatgaacggtatcatccat
ccttgcttccaccccgaagacaggccgtctccgactacctttgaggaggtgtttcagtgc
atgtttgactatatcgataggctttttgtgatggtgaggccgaggaagctactattcatg
gctattgatggtgttgctccaagagctaaaatgaatcaacaacgatctagacggtttaga
tctgctaaagatgcttccgatgctgctgctgaagaagaaaagctgagagaggagttcgag
agggagggaagaaaactcccacccaaaatcaactcccaagtcttcgattccaacgtcatc
acaccaggaacagagttcatgggcgtcctctccatcgccctccagtactacgtccacctc
aggctcaaccacgacgttggatggaaaaacatcaaggtcatcctctcggacgcaaacgtt
ccaggggaaggggagcataagatcatgtcctacatccgtcttcaaagaaacctccctggt
tttgaccccaacactcggcactgcttgtacggactggacgctgacctgatcatgttgggg
ttggcgacacatgaagttcatttctcaattcttagagaggtggtgttcactcctggacag
caggacaagtgcttcttgtgtggtcagatgggccacatggctgcggattgcgaagggaaa
gcgaagaagagggcgggtgagtttgatgagaagggcgatggttttgtcaaaaagccatat
cagtttcttcatatatggatactgagggagtacttggagtatgaaatgaggataccgaac
ccgccgttcgaggttgacctggagcggattgttgatgatttcatcttcatatgtttcttt
gttggcaacgatttcttgccgcatatgccaactctggagattcgagagggggctatcaac
ttgcttatggctgtttacaagaaggagtttaggtcatttgacggttatttaactgatggt
tgcaagccaaatttgaagagggtagaacagttcattcaagctataggatcattcgaagac
cagatatttcagaaaagaaccaggttacatcagagacaagctgaaagaataaaaggagat
aaagcacggaaaagaagaatggacgatgcagctcccactttccaaccagagtctcttgtc
cctgttgaaagattcaccggttctcgactcgcctcggctcctgctccatcaccgtttcag
tctagtgatgctgctcctcatcagaaagctagacgtctgtcttcttcaggttccagtatt
ggtgctgctcttgtcgacgttgagaacagtcttgaacctgacgagaacgagaacaaggaa
gaactaaaaacaaagctcaaggagttgatccgtgagaaatcagatgcttttaactctgat
actcatgaagaggataaggtgaagcttggggaacctggatggagagagagatattatgaa
gagaagttctcagtttcaaccattgaagagatggagaaactacgaaaggatgttgtcctg
aagtacatagaaggcctttgttgggtcatgcattactacatagaaggtgtttgctcctgg
cagtggttttatccttaccattatgcaccgtttgcatctgatctaaaggatctgggagcg
ctggatattaagtttgagttaggaactccatttaagcctttcaaccaactccttggggtg
ttcccagctgcaagtgcgcatgctcttccagagcgctataggaccttgatgacagatcct
aactcacccatcattgatttctacccaactgattttgaagttgacatgaatgggaagcgt
tactcctggcagggtattgctaagctgcctttcattgatgaaagacgccttctagaggct
gtttccgaagtggagttcacattgacggatgaagagaagcgtagaaacagcaggatgtgt
gacatgcttttcatagcaacgtctcatcgccttgctgagctcatcttttctcttgacaac
cattgtcggcaactgagtgccagggagagagtagaccttaaggttcagatcaaacctgag
ctcagtgatggtatgaacggctacttgaccccgtgttcaggggagactcaccctcctata
ttcaggtccccaatggagggtatggaggacatcttggctaaccaagtcatatgttgcatt
tacagacttccggatgcacatagccacataaccagacctcctcctggtgtcatcttccct
aagaagattgtgaacattggtgacttgaaacccccacctgctctttggcatgaggacaat
ggaaggagaccaatgcataataataacaataaccattataataacaacaataatcattat
aataataacaataatcatggaaggcaaaacccacctggaagtttatctggaaggcaccta
ggagacgcagcacatcgtcttgtcaccaacagcttgcataacagaacagcagatgcacat
acccagcatcatcatcatggtcacgcttacaatcaacctccgtatgttccaccggttcct
taccaatatggtggctacaatgctgctccacacggtgtgcaagactatgctccaccacag
tcgagacaagctccgccgtatcaaagccgaggtgggtaccaacctcgtggaaccagtggg
agattcccatcagatccttacccggtgcagcagtcacgaggaggtcaccaccaccgtgac
aacagaggaggaggagggtattctggtggttacaatcaacgccaacaacaacaacaacaa
cattgggatggtggtgaggagcattataaccagcgaggagggtatagtggtcagcatcat
cgtcagcaaggtggtgaccgcaaccgtagaggaggtgggagtcatcatcatcatcatgat
caaggccctagacatcggtattaa
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