Raphanus sativus (radish): 108834485
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Entry
108834485 CDS
T06014
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108834485
03015 mRNA surveillance pathway
108834485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108834485
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108834485
5.6.2.5 RNA 5'-3' helicase
108834485
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108834485
mRNA cycle factors
Common to processing body (P body) and stress granule
108834485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
NPHP3_N
PhoH
ATPase
AAA_16
Viral_helicase1
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
108834485
NCBI-ProteinID:
XP_018463323
UniProt:
A0A6J0LU05
LinkDB
All DBs
Position
6:complement(20071137..20078553)
Genome browser
AA seq
1214 aa
AA seq
DB search
MDSQHSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSVSVVEPSD
RTAPAAADHHSEASSPSSLSAKAGRGSSSQADALAAGVGNLNFEETGDDDGGFDYGKNDF
TEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHRDSPL
GETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPLIDDR
CFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVQPKY
EDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRL
VPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFCVDFVWKS
TSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQIN
AVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT
GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY
KNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLIPLVLGVK
QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPALSEFPSNS
FYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEK
LVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH
ECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGNRGRAGGSYM
PSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSAGGHLPHQQAT
QHNVGTIGPNVNYPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGDDFKSQGS
HVPYNMGDYSTQGGYAVEYNTQGPHGAFTGNFMNQNSQGGYSRFSGSNDFMSQEYMAHGA
QGLFTQAGFIDSSQDDGQQNPFGVNNPSLQSQGLPNSLYSQPFSHYTQPLNLSGPQQSQP
PNQGSQNPKLPHNG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacacagcgatctcttcgatacggcatctcagcctgacaccgcggtggac
gcttacacctttcttgaattcaattcccaaggcgattcggagttcgatttccccgagttc
cgatctccgaacgcatggccgacgccgtctgattccgtctccgtagtcgagccttccgat
cgcacagcgcctgccgcggcggatcaccattccgaggcctcttcgccttcttccctgtct
gctaaagcgggacgcggtagtagcagccaggctgatgcgttggccgctggtgtggggaat
ttgaacttcgaggagactggtgatgatgacggtggtttcgattacggcaagaatgatttc
acggagcacgcgtgtaagtattgtggtatctcgaacccggcttgcgtggttaggtgtaat
gtggcgtcatgtaggaagtggttctgcaattcaaggggtaacacctccggctcgcatatc
gtgaatcacctggttcgagcaaaacacaaggaagtttgtctgcatagagacagtcctcta
ggggaaacaattctcgaatgctacaactgtgggtgtcggaatgtctttcttctcggtttc
atctcagcaactacagacagtgttgtcgtccttctctgtagagatccttgtttgaatgtg
aatgcactcaaggatatgaactgggacctaagtcagtggtgtcccttgattgatgatagg
tgtttcctcccctggcttgttaaggtcccgtatgagcaggaacagctgagggcacgccaa
attagtgcacagcaaataaacaagattgaggaattatggaagactaatccggatgctact
cttgaagaccttgaaaaacctggtgtagacgatgaacctcagcctgttcaacctaagtac
gaagatgcatatcagtatcaaaacgtgtttgctcctcttattaaactcgaagcagattat
gacaagatgatgaaagagtctcagagcaaggaaaatctcacagttcgttgggatattggt
cttaacaagaagcgtgttgcttacttcgtctttccaaaggaggaaaatgaattgcgatta
gtgccgggtgatgagctacgtctgcgctactcaggagatgctgctcatccagcttggcaa
tcagttggacatgtggtcaagctaactgcacaagaggaggttgctcttgaactccgagct
aatcagggagttccaatcgacgtgaaccatggattctgtgttgattttgtttggaaaagt
acaagctttgatcgaatgcagggagcaatgaagaattttgctgtggatgaaacaagtgtg
agtggttatatttaccatcaattattgggacatgaagttgaggcccagatggtccggaac
acactaccacgacgttttggggtacctggtcttccagaactgaatgcatctcagattaat
gcagtgaagagtgttcttcagaagcccatcagtttgatccaaggtccacctggcacaggc
aagactgtgacttctgctgcaattgtgtatcacatggcaaaacagggccagggacaggtt
ctcgtttgtgccccaagtaatgttgcggtcgaccaactagcagaaaaaattagtgctact
ggcttaaaggttgttcgcctttgtgcaaagtcaagggaagctgtgagttctcctgttgag
catttgacccttcactaccaggtacggcatcttgacacttctgagaagagcgagctgcat
aagctacagcaattgaaagatgaacaaggcgagctgtcaagcagtgatgaaaagaaatac
aaaaatttgaaaagagcaacagaacgcgagataacccagagtgctgatgtcatttgctct
acttgtgttggtgctgcggatcttcggctgtcaaattttagatttagacaggtccttatt
gatgagtctactcaatcgacagaacctgagtgccttattcctttggtcctcggggtgaaa
caggttgttcttgttggtgatcattgtcagcttggccccgtaattatgtgcaagaaagca
gctcgtgctggcttggcacagtctctctttgaacgccttgtgcttcttggcattaaacca
attagattgcaggttcaatatcgtatgcatccagctttgtccgagtttccatccaatagc
ttctatgaaggaacactacagaatggagtcacggttaatgaaaggcaaacaacagggatt
gatttcccctggcccgtgcctaatcggcccatgtttttctatgtccagctggggcaagag
gagatcagtgctagtggaacatcatacctaaatagaaccgaggctgctaatgtggagaaa
cttgtgaccgctttcttaaagagtggggttgtccccagtcagattggagtgataactcca
tacgagggacagagggcatatattgttaattacatggcaagaaatggttctctccgacaa
caactttacaaggaaattgaggttgccagtgttgattcttttcaaggaagagaaaaagat
tacatcatattgtcctgtgtcagaagtaacgagcatcagggaattggattccttaatgat
ccacggaggctcaatgttgcactgacacgtgctcgctatggaattgttattcttggaaac
ccaaaggttcttagtaaacagcctctgtggaatggcttgctgacacattacaaggaacat
gagtgcttagttgagggacctcttaataatttaaagcagagcatgatacaatttcaaaaa
ccaagaaagatgtataatgatcggagaccattttatggtggtggggctggcatgattgga
aatgataatcccaatgctgacagaagaggcaaccgtggaagggctggtggttcttatatg
ccttctggcccaccaagtggttcgagattacacccagctggctatccaatacctagggtg
ccattttcaccgtttcctggtggtcctccttctcagccatatgctattccaactcgtgga
cctgttggtactggtcgtggaagttcagctgggggccaccttccccaccaacaagccacc
cagcataatgttggaactattggccctaacgtaaactatccccttgatagtccaaatagc
cagccttcacctggtggtccgctctcccaacctggatatggtagccaagcgttcagggat
ggatttatgggcggcatatctcaggatttcttgggtgatgatttcaagagccagggatct
catgttccttacaacatgggcgactattctacacagggaggatatgcagttgagtataac
acacaaggaccccatggagcgtttactggaaactttatgaaccagaattctcaaggcggt
tattctcgtttcagtgggagcaatgatttcatgtctcaggagtatatggcacatggagca
caaggtcttttcacccaggctggctttatcgattcatcccaggatgatggacaacaaaat
ccttttggcgtgaacaatcctagtcttcagtctcagggtctcccgaattcactctactct
cagcctttctcacactacacccagccactaaatctttcaggcccacagcaatctcaacct
cctaaccaaggctctcaaaacccaaaactacctcacaatggctaa
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