Raphanus sativus (radish): 108835260
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Entry
108835260 CDS
T06014
Name
(RefSeq) protein RRP6-like 1 isoform X2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108835260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108835260
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108835260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
UPA
PipA
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
108835260
NCBI-ProteinID:
XP_018464040
UniProt:
A0A6J0LV20
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Position
6:22796838..22801253
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AA seq
698 aa
AA seq
DB search
MARDDSPGLKSLEALIGGCLPENLSKLASTSLAVPANNDFHFFYTIEEEFRRGIDEISGS
SQCVLETIGGFCGKQMRCSGDDDDAYDWLVNLNDGVLQRIDEDLDLGNPKKKEIDGKAKK
VSFHIATIKKPQEEYKILVNNRNVPFQHVWLEKKDNNLGFIHPLEKLSVMDFVDKNLSEM
KPVDPLPLEGTPFKFVQEIIDLKDLAAKLSSVEEFAVDLEHNQYRSFQGLTCLMQISTRT
EDYIVDTFKLWDHVGTFLRDVFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASR
VLKLERNSLEFLLKHYCGVAANKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRID
LHTVAKEDEKPDSPLVEQVYKRSYDVCMQLYEKELLTENSYLQIYGVQAANFNAVQLAIV
AGLCEWRDRIARADDESTGYVLPNKTLLEIAKEMPINVGKLRRLLKSKLPYIERNVDAVI
SVIRRSMQNAAAFEPVVQSLKTWHPRTVFEKNIESTTEETCIEAVLSSSVSSKMFLQVEN
NTRGVRTRGLCGSEKVSVDVSKEQSGGCVALPSKRKFGSENKADEEVKVSKSKPPCVSRP
DEIIILLDDDDESDEETSDAEDDADSVSETPFKGPDISMNVKKTCGPDIIVLNDDDSDDD
SDDDSETDDGRKREVERMNVIHEQQGKFMSLKPGFLNI
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgacgattcaccggggctgaaatctctggaggcgttgattggtggttgtctg
ccggagaatctctcaaagttagcttctacatctcttgcagttccagcgaataacgatttc
cactttttctacacgatcgaggaggagttcaggcgtgggatcgatgagatttcaggaagc
tcgcagtgtgttcttgagacgataggtggcttctgtgggaaacagatgagatgttcagga
gatgatgatgatgcgtatgactggcttgttaacctgaacgatggagttctccagagaatc
gatgaggatttggatttgggaaatccaaagaagaaggaaattgatggaaaggcaaagaag
gtttcattccatatagcaacgataaagaagcctcaggaggagtataagattttggtcaac
aaccgaaatgtaccgtttcagcatgtttggctggaaaagaaggacaacaatctcggcttt
attcatccactggagaaactttcggtgatggactttgttgataaaaatctatcagagatg
aaacctgttgatcccctccctttggaaggaactccattcaagtttgttcaagaaatcatt
gatctgaaggatttagctgcgaaactgtctagtgttgaagagtttgctgttgatctggag
cataatcagtataggtcttttcaaggattaacatgcttgatgcaaatatctacaagaacg
gaagattatatagttgatacattcaagctttgggatcacgttggtacttttctccgggac
gtcttcaaagaccctaaaaagaaaaaggtaatgcatggagcagatcgagatattatttgg
cttcaacgtgacttcggcatatatgtatgcaatctctttgacacaggacaggcctcaaga
gtgctaaagctggagagaaatagtcttgaatttcttctgaaacattattgtggagttgct
gcaaataaacaataccaaaatgcagactggagaatacgaccccttccagatgtaatgaca
agatatgctagagaagatacacattatcttttgtacatttatgatgtaatgcgaatagat
ttgcacacagtagcaaaagaagacgagaaacctgactcccctctggtagagcaggtttac
aagcgcagctatgatgtgtgcatgcaactatatgagaaagagcttctgactgagaattca
tatcttcaaatttatggggttcaggcagctaatttcaatgcggttcaacttgccattgtt
gcggggctttgtgaatggcgagatcggattgcacgagcagacgatgagagcactggttat
gtattaccaaataaaactcttcttgaaatagcgaaggaaatgccaattaatgtgggaaag
ttgcgacggttgttaaagtcaaagctcccttacatcgagcgtaatgttgatgctgtgatc
agtgtcatcaggcgatcaatgcaaaatgctgcggcgttcgagccagttgttcaatcttta
aaaacatggcatcctagaacggtctttgagaagaatattgaaagcaccactgaggaaaca
tgcatagaagctgttttgtcttcttctgtgagttcgaagatgtttttgcaggttgaaaat
aacacccggggcgtcaggaccagaggcttgtgtggttcagaaaaggttagtgtggatgtt
tcgaaggaacaaagcggtggttgtgtagctttgccttcaaagaggaagtttggaagtgag
aacaaggcagatgaagaggtcaaagtgtccaagtcaaagccaccatgtgtctctaggcca
gatgagattattatactgttggatgacgatgatgagtctgatgaagaaacatcggacgcc
gaagatgatgcggatagtgtttcagaaacgccttttaagggaccggatatatcaatgaac
gtgaagaagacatgtggtccggatattatcgtgttaaatgatgatgactcagatgatgac
tcagatgatgactcagaaactgatgatggtaggaaaagggaagttgaaaggatgaatgtg
atacatgaacagcagggaaaattcatgagtttgaaaccgggctttctcaacatttag
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