Raphanus sativus (radish): 108835537
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Entry
108835537 CDS
T06014
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108835537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108835537
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108835537
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108835537
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108835537
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108835537
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108835537
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108835537
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108835537
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108835537
Exosomal proteins of other body fluids (saliva and urine)
108835537
Exosomal proteins of breast cancer cells
108835537
Exosomal proteins of colorectal cancer cells
108835537
Exosomal proteins of bladder cancer cells
108835537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
KH_PARP14_2
Motif
Other DBs
NCBI-GeneID:
108835537
NCBI-ProteinID:
XP_056848689
UniProt:
A0A9W3CAX8
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All DBs
Position
8:complement(25125905..25129412)
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AA seq
600 aa
AA seq
DB search
MASTFTPTSSIGSMVAPNGHKADKKLMNKLSSSSFGRRQNVFPRLRRSTPAIVCAAKELH
FNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP
VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK
ALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTLEEGKSAENA
LYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYP
ILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVG
LSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLN
ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKV
DAIKAGLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKYGYNAATG
KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYGY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaactttcaccccaacgtcttccattggttccatggttgctccaaatgggcac
aaagcggataagaagctcatgaacaagctgtcttcaagctctttcgggaggaggcagaac
gtgttccccaggctcagaagatccactcctgctattgtatgcgcagccaaggagttgcat
ttcaacaaagacgggactaccatcaggaagcttcaagctggtgtcaacaagcttgcagac
ctagttggtgttacacttggacctaaggggagaaatgttgttcttgagagcaagtatgga
tcacctagaattgttaatgatggtgtcactgttgctagggaggttgaactggaagacccg
gttgagaacattggtgctaagcttgtgaggcaagcagctgccaagaccaatgacttggcc
ggtgatggtaccacaacatctgtggttcttgcacaaggttttattgctgagggtgtcaag
gtggtggctgctggtgcaaaccctgtattgatcactagaggcattgagaagacagcaaag
gctttggttgccgagctcaagaaaatgtctaaggaggttgaagacagtgagcttgcagat
gtggcagcggttagtgctggtaacaatgccgaaattggaagtatgattgctgaagcaatg
agcagagttggcaggaagggtgtggtgacacttgaggagggtaaaagtgctgagaacgct
ctctacgttgtggaaggaatgcaatttgatcgcggttacgtctccccttactttgtgaca
gacagtgagaaaatgtcagttgagttcgacaattgcaagttgcttcttgttgacaagaag
attaccaatgcaagggatcttgttggtgttttggaggatgcaattagaggaggatacccg
attttaataattgcagaagacattgagcaggaggctttagcgacccttgttgttaacaag
cttagaggcacactgaagattgcagctctcaaggctccaggatttggagagcgcaagagc
caataccttgacgatattgccatcctcactggagcaactgtgattcgtgaggaagttggt
ctttcacttgacaaagctggaaaagaggttcttggacatgccgcaaaggtggtcctcact
aaggagacttcaaccattgtgggtgatgggagcacacaggacgcagtgcaaaagcgtgtt
acacaaattaagaaccttattgagcaagcagagcaagattatgagaaggaaaaactgaat
gagagaattgcaaagctctctggtggagttgctgtgattcaggtcggagcacaaacggag
acagaactcaaagagaagaaactgagagttgaagatgctcttaatgctacaaaggctgct
gttgaggaaggtattgtagttggtggtggctgtactctgcttcgtcttgcttccaaggtg
gatgccattaaagccggtcttgacaatgatgaagaaaaggttggagcggatatcgtgaaa
agagcactgagttaccctctgaaactgattgccaagaacgctggagtcaatggaagcgta
gttagcgagaaggtgctttctaacgataatgtgaagtacggttacaatgctgcaaccggc
aagtacgaggatctaatggctgcaggaatcatcgatccaactaaggttgtgagatgttgc
ttggaacacgcagcttcggttgcaaagacattcttgatgtctgactgtgtcgttgttgag
atcaaggagcctgagccagttcccgtaggcaacccaatggacaactcaggttatggatac
tga
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