KEGG   Raphanus sativus (radish): 108835566
Entry
108835566         CDS       T06014                                 
Name
(RefSeq) transcription factor efuD
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108835566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    108835566
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     108835566
 Prokaryotic type
  Archaeal type
    TFE
     108835566
SSDB
Motif
Pfam: TFIIE_alpha MarR DUF6396 Zn_ribbon_8 wHTH-PRTase_assc DZR Pesticin_RB
Other DBs
NCBI-GeneID: 108835566
NCBI-ProteinID: XP_056859391
UniProt: A0A6J0LWW4
LinkDB
Position
1:1635530..1639102
AA seq 476 aa
MDNKGPVQKTVVLEPFIKLVRLLARAFYDDYTTKSDNQQKTARSDNRGIAVVVLDELTRK
QWVREEDLAKELKLHAKQLRKIIRHFEEQNLIMRDHRKETAKGAKMYSVAVAATTGGRAE
DKVKFHTHSYCCLNYPQIYDVVRYKLHRMKKKLKDELEDKNTVQEYGCPNCQRKYNALDA
LRLISMEDDAFHCENCNGELVVECNKLTSEEVADGDDNARRRRREKLRDMLQKMEVQIKP
LMDQINRVKDLPVPDFGSLIAWEARAAIAARENGELNPNDPLRSQGGYGSTPMPFLGETK
VEVNLGEGKEDVKANGGDSSLKVLPPWMIKQGMNLTEEQRGEMRQEAKVDVGSSKLSDDK
KSAMESGDDKDVLKDEYVKAYYAALIQQQQELAQKQRQEEESGGEVVAPDSELASTSSDR
QIGMKSKREEEEDEWEEEPPIAVAGNGNYKVDLNVEAAETSGGEEEEEEDIDWEEG
NT seq 1431 nt   +upstreamnt  +downstreamnt
atggataataaaggcccagtgcagaagacagttgtgctcgagccgtttatcaagttggtg
aggcttttagcaagggcgttctatgatgattatactaccaaaagcgataatcagcagaaa
actgctagaagtgacaatagagggatcgccgttgtggtgctggatgagcttaccaggaag
caatgggtgagagaagaggacttggctaaggagttgaagttgcacgctaagcaacttaga
aaaattatacgacactttgaagaacaaaacttgatcatgcgtgaccacaggaaagagact
gcaaaaggtgcaaagatgtatagtgttgcggtagctgctacaactggtggtcgagcagag
gacaaggttaagttccatacccactcgtattgctgcctcaactatccccagatatatgat
gttgttcgttataaactgcaccggatgaaaaagaagctcaaagacgaactagaagataag
aatactgttcaagagtatggctgtcctaactgccagaggaaatataatgcactggatgcc
ttgagattaatttctatggaagacgatgcttttcattgtgaaaattgcaatggtgaattg
gttgtggaatgtaacaagctaacttcagaagaagtagcagatggagatgataatgcaagg
agacggcggcgggaaaaactaagagatatgcttcagaagatggaggttcaaataaaacct
ctgatggatcaaataaacagagtaaaagacctgccagttcccgactttggatctcttatc
gcatgggaggctcgtgcagctattgctgctcgtgaaaatggtgagcttaaccctaatgat
cctttgaggtcacaaggtgggtatggttcaacgccaatgccatttctcggagagacaaag
gttgaggttaaccttggtgaaggaaaagaggatgtcaaagctaacggtggagattctagt
ctgaaagtgttgcctccatggatgatcaagcaaggaatgaatctgacggaggaacaaaga
ggagagatgaggcaggaagcaaaggttgatgttggctcatcgaaactttcagatgacaag
aaatcagccatggaaagtggcgatgataaagatgtgttgaaggatgagtatgtcaaagcg
tactacgctgctctgatacagcagcagcaagaactggcacagaagcagagacaagaagaa
gaatctggaggtgaagtggtagcccctgacagtgagttggcatcgacatcctcagatcgt
cagattggtatgaagtccaaacgcgaagaggaagaagatgaatgggaagaagagccacca
attgcagttgcaggaaatggaaactacaaggtggacttgaatgtggaagcagcagagact
tcaggtggtgaagaggaagaggaagaagacatcgactgggaagaaggctga

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