Raphanus sativus (radish): 108835566
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Entry
108835566 CDS
T06014
Name
(RefSeq) transcription factor efuD
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108835566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108835566
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
108835566
Prokaryotic type
Archaeal type
TFE
108835566
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
MarR
DUF6396
Zn_ribbon_8
wHTH-PRTase_assc
DZR
Pesticin_RB
Motif
Other DBs
NCBI-GeneID:
108835566
NCBI-ProteinID:
XP_056859391
UniProt:
A0A6J0LWW4
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Position
1:1635530..1639102
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AA seq
476 aa
AA seq
DB search
MDNKGPVQKTVVLEPFIKLVRLLARAFYDDYTTKSDNQQKTARSDNRGIAVVVLDELTRK
QWVREEDLAKELKLHAKQLRKIIRHFEEQNLIMRDHRKETAKGAKMYSVAVAATTGGRAE
DKVKFHTHSYCCLNYPQIYDVVRYKLHRMKKKLKDELEDKNTVQEYGCPNCQRKYNALDA
LRLISMEDDAFHCENCNGELVVECNKLTSEEVADGDDNARRRRREKLRDMLQKMEVQIKP
LMDQINRVKDLPVPDFGSLIAWEARAAIAARENGELNPNDPLRSQGGYGSTPMPFLGETK
VEVNLGEGKEDVKANGGDSSLKVLPPWMIKQGMNLTEEQRGEMRQEAKVDVGSSKLSDDK
KSAMESGDDKDVLKDEYVKAYYAALIQQQQELAQKQRQEEESGGEVVAPDSELASTSSDR
QIGMKSKREEEEDEWEEEPPIAVAGNGNYKVDLNVEAAETSGGEEEEEEDIDWEEG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggataataaaggcccagtgcagaagacagttgtgctcgagccgtttatcaagttggtg
aggcttttagcaagggcgttctatgatgattatactaccaaaagcgataatcagcagaaa
actgctagaagtgacaatagagggatcgccgttgtggtgctggatgagcttaccaggaag
caatgggtgagagaagaggacttggctaaggagttgaagttgcacgctaagcaacttaga
aaaattatacgacactttgaagaacaaaacttgatcatgcgtgaccacaggaaagagact
gcaaaaggtgcaaagatgtatagtgttgcggtagctgctacaactggtggtcgagcagag
gacaaggttaagttccatacccactcgtattgctgcctcaactatccccagatatatgat
gttgttcgttataaactgcaccggatgaaaaagaagctcaaagacgaactagaagataag
aatactgttcaagagtatggctgtcctaactgccagaggaaatataatgcactggatgcc
ttgagattaatttctatggaagacgatgcttttcattgtgaaaattgcaatggtgaattg
gttgtggaatgtaacaagctaacttcagaagaagtagcagatggagatgataatgcaagg
agacggcggcgggaaaaactaagagatatgcttcagaagatggaggttcaaataaaacct
ctgatggatcaaataaacagagtaaaagacctgccagttcccgactttggatctcttatc
gcatgggaggctcgtgcagctattgctgctcgtgaaaatggtgagcttaaccctaatgat
cctttgaggtcacaaggtgggtatggttcaacgccaatgccatttctcggagagacaaag
gttgaggttaaccttggtgaaggaaaagaggatgtcaaagctaacggtggagattctagt
ctgaaagtgttgcctccatggatgatcaagcaaggaatgaatctgacggaggaacaaaga
ggagagatgaggcaggaagcaaaggttgatgttggctcatcgaaactttcagatgacaag
aaatcagccatggaaagtggcgatgataaagatgtgttgaaggatgagtatgtcaaagcg
tactacgctgctctgatacagcagcagcaagaactggcacagaagcagagacaagaagaa
gaatctggaggtgaagtggtagcccctgacagtgagttggcatcgacatcctcagatcgt
cagattggtatgaagtccaaacgcgaagaggaagaagatgaatgggaagaagagccacca
attgcagttgcaggaaatggaaactacaaggtggacttgaatgtggaagcagcagagact
tcaggtggtgaagaggaagaggaagaagacatcgactgggaagaaggctga
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integrated database retrieval system