Raphanus sativus (radish): 108836123
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Entry
108836123 CDS
T06014
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108836123
Transcription machinery [BR:
rsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
108836123
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
108836123
NCBI-ProteinID:
XP_056866040
UniProt:
A0A9W3DQE9
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Position
4:complement(47465389..47468215)
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AA seq
560 aa
AA seq
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MASFNSFPIPKQIVGSSSSSSSGTRPRILVRSSMSSSSMASTNSMLVLVPPHPLIKHWLS
LFTCHQTPFPIFVRIASRWSFLSSVKEETRFHQRDHLPKACGCASATAENVYVELKDPKE
SSGVGLVGEHMSYPEKAHLSRTMLQYNLLGKNLLALEQTFVALESLRMERDIMSQMRKLG
AAELFNTCLSRSRGSSATSCLPDTATESVVDTTEEQQTFVHSRRKLRKKARKSSLVTGNG
DKGIDLGPRVRRASKYRKKRERISRNEAEMSQGVKIVAEMERIRTKLEEESGKVASMSCW
AEAAGMNEKLLIRNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQ
GAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPASIIRTMSQIQKARKTLKTSQ
GIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEE
AVMRQSARRDVHDLLQGLEDREKQVMVLRYGLQDYSPKSLEEIGKLLRVSKEGIRKIERR
AMAKLRDQPKTDSLRYYLNQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccttcaattcgttcccaattcctaaacagattgttggttcttcttcttcttct
tcgtctggtactcggccacgtatcttggtgcgatcgagtatgtcttcgtcgtccatggcc
tcaaccaatagtatgctggtgttggtacctccgcatcctttgatcaaacactggctctct
ctcttcacatgtcaccagactcctttccccattttcgttagaattgcatcgaggtggtcg
ttcctatcctcagtaaaagaggaaaccagatttcaccagagagatcatcttcctaaagca
tgtggctgtgcttctgcaactgctgaaaatgtctatgtagagctcaaagatccaaaggaa
agtagtggcgtgggtttggttggagaacatatgtcttatccagagaaagcccatttatct
cgtaccatgttgcaatacaatctactagggaagaaccttttagcgctagagcaaactttc
gtcgccttggagtcgttaagaatggaaagagatatcatgtcgcagatgcgcaagttgggt
gctgctgagttattcaacacctgtctttctaggtcccgtggttcctcagccacttcatgc
ttacctgacacagcaaccgagtcggtggtggatactacagaagaacagcaaacctttgtg
cattcaagaaggaaactgaggaagaaagcaagaaagtcgagtttggtgactggaaatggt
gataagggtattgatctagggcctagagtgagaagagcatcaaaatatagaaagaagaga
gagaggatatctagaaacgaggctgagatgtcacaaggagtcaagatagtggcggagatg
gagaggatcagaacgaaactggaagaggagagtggcaaggtagcgagtatgagttgttgg
gctgaagctgcagggatgaacgagaaacttctcatccgcaatcttcatttcggttggtac
tgtagagatgaactggtgaaaagcacccggtctttggttctcttccttgcaagaaactat
cgtggactcgggatcgcccacgaagatttaattcaggcagggtatgtgggagtgttgcaa
ggagcagagaggtttgatcacacgaggggttacaagttttcgacatatgtgcagtattgg
ataagaaaatccatgtccacgatggtgtcacggcatgcaagaggcgtccatattcctgcg
tcaataatccgaacaatgagtcagatacagaaggctcgcaagaccttgaaaacgagccag
gggataaagtatccagctgatgaggagatttcgaaacttacaggctactcgttaaagaag
attagagcagctaaccaatgcctaaaagtggttggttcaatcgacaagaaagttggggat
tgctttaccacaaagttcttggagtttacaccagacacgacgatggagagtccagaggag
gctgtgatgaggcagagcgcaaggagagacgttcatgatcttttgcaagggctagaggat
agagagaagcaagtgatggttctacgttatggtctgcaagactatagtcccaagtcattg
gaagagattgggaagcttcttagggttagcaaagaagggattaggaagatcgaacggaga
gcaatggctaaactcagagaccaacccaaaaccgacagcctcagatattatttgaaccag
tga
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