Raphanus sativus (radish): 108836228
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Entry
108836228 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108836228
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108836228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108836228
03041 Spliceosome [BR:
rsz03041
]
108836228
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108836228
Spliceosome [BR:
rsz03041
]
Complex B
Other components
Prp19-related factors
108836228
Complex C
108836228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
108836228
NCBI-ProteinID:
XP_018464916
UniProt:
A0A6J0LZU2
LinkDB
All DBs
Position
6:15533504..15537058
Genome browser
AA seq
915 aa
AA seq
DB search
MASISKDLYPSQEDLVYEEEILRNPFSLKLWWRYLISKSDSPFKKRFVIYERALKALPGS
YKLWHAYLRERLEIVRNLPVTHPHYDSLNNTFERGLVTMHKMPRVWVMYLQTLTSQRLVT
RTRRTFDRALCALPVTQHERVWEPYLVFVGQEGVPIETSLRVYRRYLMYDPSHIEEFIEF
LVKSSRWQEAAERLAGVLNDDMFYSIKGKNKHKLWMELCEILVRHANEISGLNVDAIIRG
GIRKFTDEVGMLWTSLADYYIRKTLLEKARDVYEEGMMKVVTVRDFSVIFDVYSRFEEST
VAKKMEMMSESDEEDEGEEEGDEEEEDVRLNFSLSVKELQRKILNRFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGDAAKQILTYTEAVRTVDPMKALG
KPHTLWVAFAKLYEHHKDLVNTRVILDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVKRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK
ILDLRIATPQIILNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG
KAKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQRL
EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRSRAVY
KYASQYADPRSDPDFWNNWHEFEVLHGNEDTYREMLRIKRSVSASYSQTHFILPENMMLK
DKIDVEEAKDELKKAGFDEMAALERQLMAPMSTTVTSKDGGRRVGFVSAGVIAQSGENAG
KPVTGNGEDIELPDESDEEESDGEDNVEIAQKEVPAAVFGGLARKREEDGKEAEEDGAGK
ALGALERIKRQKLAQ
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatctccaaagatctctacccatcgcaagaagatctcgtctacgaggaagag
atcctccgaaaccccttcagcctaaagctctggtggcgttacctaatctccaaatccgac
tcccctttcaagaaacgcttcgtcatctacgagagagccctcaaggccctacccggaagc
tacaagctctggcacgcttacctccgcgagaggctcgagatcgtaaggaacctccccgtg
actcaccctcactacgactccctcaacaacaccttcgagcgtgggctcgtgactatgcac
aagatgcctagggtttgggtcatgtacctccagacgcttacttctcagaggctcgtgacg
aggacgaggaggacgtttgaccgtgcgctatgcgccttgcccgtgacgcagcacgagagg
gtttgggagccgtatcttgtgtttgttgggcaggagggtgtgcctattgagacgtctctt
agggtttacaggaggtacttgatgtatgatccttctcacattgaggagtttattgagttt
cttgtcaagtcgtctcgttggcaggaggcggcggagaggcttgctggtgtgttgaatgat
gatatgttttattctattaaagggaagaataagcataagctgtggatggagctttgtgag
attctcgtgaggcatgctaatgagatctcggggcttaacgtggatgctattataagggga
gggattaggaagtttactgacgaggttgggatgctgtggacttctcttgcggattattat
attaggaagactttgctggagaaggctagggatgtttatgaggaagggatgatgaaagtt
gttactgtgagggactttagtgttatattcgatgtgtattcgaggtttgaggagagtact
gttgctaagaagatggagatgatgagtgagagtgatgaggaagatgagggggaagaggag
ggtgatgaggaggaggaggatgtgaggcttaatttctctctgtcggtgaaggagctgcag
aggaagatactgaataggttttggcttaacgatgataacgacgttgatctgaggttggct
cgcttggaggagctaatgaacagaagacctgcgttagctaacagtgtgctccttaggcag
aacccacacaacgttgagcagtggcaccgcagggttaaaatctttgagggagacgcagcg
aagcagattctcacgtatacagaggcggtgaggactgtggatcctatgaaagcgcttggg
aagcctcatacgttatgggttgcttttgctaaattgtatgaacaccacaaagacctagtc
aatactcgagtgattcttgacaaggcggttcaggtgaactacaaaacagtggaccatctc
gccagcgtgtggtgtgagtgggctgagatggagctgaggcacaagaatttcaaaggagcc
ttagagctgatgaggcgtgctacagctgtgccgacggtagaagtcaaaaggagagtggct
gccgatgggaacgagccggttcagatgaagctgcacaggtccttgaggctctggtccttt
tacgttgatttggaggagagtcttggaaccttggagtcgacgagagctgtctatgagaag
atattggatctgaggatagctacgcctcagatcattttgaactacgcttaccttctcgag
gagaataagtactttgaagatgcgttcaaggtgtatgagagaggtgtcaagatattcaag
tatcctcatgtgaaagacatatgggttacttaccttacaaagtttgtcaagagatatgga
aaggcaaagctggagcgggccagagagttgtttgagcatgctgtctcaatggctccatca
gatgctgtgaggaccttatacctacaatacgccaagctagaagaggattatggtctggcc
aagcgagccatgaaagtctacgaagaagccaccaaaaaggttccagaagggcagaggctg
gagatgtatgagatatacatttcccgagcagcagagatatttggtgttccaagaacgagg
gagatatatgagcaagcgatagaatctggtcttccacacaaggatgtgaagatcatgtgc
attaaatttgcagagctggagaggagtctgggagagatcgaccgttctcgtgcagtgtac
aagtatgcctctcagtatgctgatccaagatcggacccggacttctggaacaactggcac
gagtttgaggtgcttcatgggaatgaagacacgtatagagagatgcttaggatcaagaga
agtgtctccgctagttacagtcagactcatttcattctaccggagaacatgatgctaaag
gacaagatagatgtggaggaggcgaaagacgagctgaagaaagcgggttttgatgaaatg
gcagctctggagaggcagctgatggctccaatgtctaccacggttacatcaaaagatggt
ggaagaagagttgggtttgtgagcgcaggagtcatcgcacagtcgggtgagaatgcaggg
aaacctgtgactgggaatggggaagatatcgagcttccggatgagagtgatgaagaggag
tctgatggagaagacaatgtagagattgctcagaaagaagtccctgctgctgtgtttgga
ggacttgccagaaagagagaggaagacggcaaagaagctgaggaagacggtgcaggcaag
gctctgggtgcgctagagaggataaagagacagaagctagctcagtga
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