Raphanus sativus (radish): 108836318
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Entry
108836318 CDS
T06014
Name
(RefSeq) protein PIR
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108836318
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108836318
Factors involved in mRNA localization
Other mRNA localization factors
108836318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
108836318
NCBI-ProteinID:
XP_056861223
UniProt:
A0A6J0M007
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All DBs
Position
3:complement(24441751..24449195)
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AA seq
1282 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKA
LNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREI
QRWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FIVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVKLNRMINIFKNDPVI
PAFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVNHIGAL
RAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQ
SAWKFSRPCRDAAETQEASGSYSDYEKVVRYNYTAEERKALVELVGYIKSVGSMLQRCDT
LVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTRPEHEM
PSSQHGGDESKSNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGNNGSEIPVN
DLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIECSLPWMLI
DHILEAPNSGLIESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDIFVSRLSES
IFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTINLRSLIAQR
MNKTFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSQDLTIDPFSLMLNEMQEN
ISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGT
QDLTAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGL
QEALPKSIGLLSFDGGVAGCMRLIREQLNWGTKAELKTEVLRGIKEIGSVIYTMGLLDIV
LREVDTKRFMQTAPWLGLIPGAEGQIVNAQEGESPLVNLLKSATSAVVSSPGCLNPAAFY
TMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGFVDITTSKDFYR
IYGGLQIGYLEEITVPQSAQQEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEV
ETVSASHTHRNPQVLQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPL
PRVRFDNTVSAFESLPQKGTVG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccggtagaggaagcaatcgcagctctttccactttctccttagaggatgag
caaccagaagtgcaaggacctgctgtgatggtttcagctgaaagagctgcaaccgatagt
cccatcgagtatagtgatgttgcggcataccggttatctctttcagaagacacaaaagct
cttaaccagctgaacacgcttatacaagaaggaaaagagatggcgtcgattctatacaca
tatagaagctgcgtcaaagcactgcctcagcttccagaatctatgaagcatagccaggca
gatttgtacctagaaacttatcaagttttggacttagaaatgagccgtttacgcgaaatc
cagagatggcagtcgtcggcttcagctaaactagctgctgatatgcagaggttttcaaga
cctgaacggcgaatcaatggccccacagtcacacatctttggtcaatgctgaagttgctt
gatgtcttggttcagcttgatcatcttaaaaatgctaaagctagcattcctaatgatttc
tcttggtataaaagaacattcactcaagtcagtgcccagtggcaagatacggataccatg
agagaagagttagatgacttacagattttccttagcacaagatgggctattttactcaac
ttgcatgttgaaatgttccgtgtgaacaatgtggaagacattctccaagttctcatagtt
ttcattgttgagtctctggagttggacttcgcactcctttttcctgagaggtatattctt
ctccgagtcttgcccgttcttgttgtcttagcaacgccatcagagaaagataccgaagct
ttatacaagagggtaaaactcaacagaatgatcaacattttcaagaatgatcctgtcatt
cctgcgtttccagatctccatctttctcctgctgcaattttgaaagaactgtcagtatac
tttcaaaagttttcttcacagactcgccttttgactcttccagcacctcatgagctccct
ccacgtgaagcgctagaataccagaggcattatttgatagtcaaccacattggcgccctc
cgtgctgagcacgacgatttcacaatccgatttgcttcatccatgaatcagttattgctg
ttgaagtcaaatgatggagcatacactgaatggtgcagagaggtgaaaggaaacatgtat
gatatggttgttgaaggtttccagctgctaagcagatggactgcacgcatttgggagcaa
tctgcttggaaattttctcgcccgtgtagggatgcagcagagacgcaagaagcctccgga
tcatattctgattacgagaaggtggtgaggtacaattatactgcagaagaaaggaaagcc
ttggtagaacttgttggctatataaagagtgtaggatcgatgctgcagcgctgtgacaca
ttagttgcagatgctttatgggagacaatacatgccgaggttcaagattttgtacaaaac
acgttagccacgatgttgcgtaccaccttccgaaagaagaaagatctctcaaggattctt
tctgatatgcggacactttcagctgactggatggcaaacaccaggcccgaacatgagatg
ccatcttcacaacacggaggtgatgaaagcaaatcgaacttcttttatccgaggcctgtt
gcccctacagcagcacaggtgcattgcctgcagtttttgatatatgaggttgtctctggt
ggaaatctgaggaggccagggggattctttggaaataatggctctgagattcctgttaat
gacttaaagcaactggagactttcttttacaagctaagcttttttctgcacatattggat
tactcagcaagtattggaatattgactgatctcgggttcctgtggtttagagaattttac
ctggagtcttcacgtgttattcagtttccgattgaatgttcactaccatggatgctgata
gatcacattctcgaagccccaaattcaggccttattgagagtgttctgctgccttttgac
atttataatgactcagctcaacaagcactggttgtgctgaggcagaggttcctctatgat
gaaattgaggctgaggtggaccatggttttgatatatttgtttcaagactctcggagtct
atattcacatattacaagagctggtcagcaagtgagcttcttgatccatcatttctcttt
gccttggacaatggtgaaaagttctccatccagcctgtgaggtttactgcgttatttaag
atgacaaaagtaaagattcttggtagaacaattaatttaagaagtttgatcgctcaaagg
atgaataaaacttttagagagaatctggagtttctctttgatcgttttgagtcccaggac
ctatgtgctgtagtagaactggagaagctcatagatatcctaaagcactcacatgaactg
ctttcacaagatcttacaatagatcctttcagcctaatgctgaatgaaatgcaagaaaac
atctctcttgtctcattttccagtcgacttgctacacagatatggtcagagatgcagagt
gatttcctaccaaacttcatactttgcaataccacacagagatttgtccgctcatctaaa
gttcctcctactcagaaaccatcagtgccttctgctaagcctagtttctactgtggcact
caagacttaactgcagcacatcaaagttttgcgcggttgcatagtggatttttcgggata
ccacatttgttttccatagttaaacttcttggatccagatcattgccttggcttataaga
gcgttgctggatcatatatcaaataagataacaacactagaaccaatgatctctggactg
caagaagcattgcccaagtctatcggattgctttcttttgatggtggtgtcgcaggctgt
atgaggcttattagagaacaactaaactggggcacaaaggcagaactcaaaacagaagtt
ctacgtggaataaaggaaattggaagtgtgatatatacaatgggacttcttgatatcgta
ttgagagaagtagacacaaaacgtttcatgcaaacagctccatggttgggattgatcccg
ggcgcagaaggacagatagttaacgctcaagaaggcgaaagcccacttgtcaatctcttg
aagtcagcgacttctgcggttgtgtcaagtccaggttgccttaatccagcagcgttctac
accatgtcgaaacaagcagaagctgcagatcttttgtataaggcgaacatgaacggtgga
agcgttctcgaatacacacttgcattcacaagcgcttcgcttgacaaatactgcagtaaa
tggagtgctcctccaaagacgggtttcgtcgatatcacaacttcaaaggacttttaccgc
atttacggtggtcttcagatcggatatctggaggagataacagttccacaatcagctcag
caagaagtcctcggtgattcgatagcttggggtggttgcactatcatttacctgctagga
cagcaacttcactttgagttgtttgatttctcgtaccaagtactgaatgtctccgaggtt
gagaccgtgtctgcttcacatactcataggaatcctcaagttctccagggatgggaaggt
ttgttggaagggatgaagaaagctcgacggctgaacaaccatgtcttcagcatgctcaaa
gctcgttgtccactcgaagacaaaacggcttgtgccatcaaacagagcggcgcaccgcta
ccacgtgtcaggtttgataatacagtgtctgcctttgagtctctgcctcagaaaggaacc
gttggctga
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