Raphanus sativus (radish): 108836356
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Entry
108836356 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108836356
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108836356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108836356
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108836356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
108836356
NCBI-ProteinID:
XP_056845460
UniProt:
A0A9W3C1T3
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Position
6:24329054..24333150
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AA seq
796 aa
AA seq
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MIRGGRSYATSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTALVTTLIVVPAS
NPAQKILCYCWTASLDGTIRHWDFSGAELLKTIDAQLPIYSMVIPSLLSEPQQSDSSKLV
AYVSVEDTSLVREGSTELRGHIRRFNLAKDRLPRGDTLKETEEPKSIVISPSGEFFGIRH
KCKIHVWDVPSGGSRNAVSKKMTLHHTKAINAFAFHPTERIIAAGDVTGRVLIWRGFGNR
KLALGSQKKNARSMADLDNPGVRDGDDAESCTTWHWHSAEVNVLNFSSDGAYLYSGGREG
VLVVWQLDTGKKKFLPRIGSPLLYFIWSPEPTLSSVVCADNQIHLLKMPSMEISRTISGI
KPPPSLPKMYEGLSSTVAFDRSSGIAALCTENYCVQLYNLLNDRGISEVQVCERNHQPGD
EVTVVVTAVALSLDGSAMSTTEVKLPEDGIGGLVSLKFWESEPDNKTFTLSTIVYEPHKD
AGVSAIAFHPTRSMAVSTSFGGDFKIWVCKDKDKDSSWICHAVGSYKKKPMTAAAFSGDG
TVLAVAAENVITLWNPDKNILLSVLGATLTPITKLCFAGKSEFLVAASNFPKPELSVWNT
SKLSLSWSYGLRIEAITSTVDSSTFAVLALVPKTFKKSKSKKNVFRGRDGAILLFNGSDP
KPVSIWTVMKAQGGSISFLEGDDKSQLRLAYVNGSHEYVVFDPNSDETHERSAIDYEGLV
GDEETGDFGYTSLYGQLPDYDKKRKEDTESLATPFISSERPWETIFSGSTLNFPPLQKLC
GDFFESLMEKSNSVVE
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcggcggtagaagctacgcgacatcacctccctccttctccaacgacgcaaag
aagcttctcgtctgcacaggcaacaccgtctccgttttcagcgccgccactggcttacag
attacttctcttgaaggtcacacagctctagtcacgactctcatcgttgttcctgcttca
aaccctgctcagaagatcctctgttattgctggactgcgtctcttgacggtacgattcgt
cactgggacttctcaggagctgagcttttgaaaaccattgatgcccaacttcccatttac
tctatggtcattccttctctattgagtgagcctcaacaaagtgactctagtaagttagtt
gcttatgtttctgttgaggatactagtctggttagagaaggttccactgagttgcgtgga
cacattcggaggtttaaccttgctaaagaccgtcttcctcgtggagataccttgaaagag
acggaagagccaaagtctatagttatcagtccctctggagagtttttcggaatccgccac
aagtgcaagatccatgtgtgggatgttccttctggagggtcgaggaacgcagtttccaag
aagatgacgttgcatcacactaaggctatcaatgcttttgcgtttcatcccacggagagg
attatagctgctggggatgtgactggaagagtgttgatttggagagggtttggtaataga
aaacttgcattgggtagtcaaaagaagaatgctagatcaatggctgatttggataaccct
ggggtgagagatggggatgatgctgagtcttgcactacttggcattggcactctgctgaa
gttaatgtccttaacttctcttcagatggagcttatttgtattcagggggaagggaaggg
gtgcttgtcgtttggcagctagacactgggaagaagaagtttttaccaaggatagggtct
cccttgttgtacttcatctggtctccagaaccaactctttcttctgtggtttgtgcagac
aaccagatccatttgcttaaaatgccttccatggagatctcaaggaccatttctggaatc
aagcctcccccatcactgcctaagatgtatgaaggcttgtctagtactgttgcttttgat
agatcttctggcattgctgctttgtgcacagagaattattgtgttcagctatacaatctc
cttaatgaccgggggatttcagaggttcaagtttgtgagagaaaccatcaaccaggcgat
gaagtcacagttgtggtgacagcggttgctctctcccttgatgggtcagcgatgagtaca
actgaagtgaaacttccggaagatggcataggaggcttagtgtcccttaagttttgggag
tctgaaccagacaacaaaactttcaccttatccacaatcgtatacgaacctcacaaggat
gctggtgtctcagccattgccttccaccctacccgttccatggctgttagtacatcgttt
ggtggtgacttcaagatttgggtttgcaaggacaaggacaaggactctagctggatatgc
catgcagttggctcttacaagaagaagccaatgactgctgctgctttctctggagatggc
actgttctggctgttgcagctgagaatgtcattactctttggaatccggacaagaacatt
ctcctctctgttttaggagcgactcttacgccaatcacaaagctctgtttcgctgggaag
tctgagttccttgttgctgcatctaattttccaaaacctgaactatctgtttggaacaca
tcaaagctatctttatcatggtcatatggattacgcattgaagctatcacttccacagtg
gattcatccacttttgctgtcttggctttggtcccaaaaacttttaaaaagagtaaatct
aagaagaatgtcttccgcggtagagatggtgccattctcttgtttaacggatcagaccct
aagcctgtatctatatggaccgtgatgaaggctcagggaggatcaatctcgtttcttgaa
ggagacgacaagtctcagcttcgtcttgcgtatgtaaatggaagccatgagtatgttgtt
ttcgatcccaatagtgatgagacacacgagcgtagtgctattgattacgagggtcttgtt
ggtgacgaagagacaggagattttggatacacatcgctgtacggacagttgcctgactat
gacaagaagagaaaggaggatactgagtcgttggcgacaccgtttatatcgtcagagaga
ccgtgggaaacgatattcagcggttcaacactaaacttcccgcctcttcagaagttatgt
ggtgacttctttgagtcactaatggagaaaagtaactctgttgtggagtga
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