Raphanus sativus (radish): 108836467
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Entry
108836467 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 5
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108836467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108836467
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108836467
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
108836467
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
DNA_pol_phi
zf-RING_5
zf-C3HC4_2
Nop14
DUF1644
Adeno_L433K_22K
BAF1_ABF1
CDC45
ZnF_RZ-type
Motif
Other DBs
NCBI-GeneID:
108836467
NCBI-ProteinID:
XP_018465124
UniProt:
A0A6J0LZA1
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All DBs
Position
7:9567554..9569111
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AA seq
368 aa
AA seq
DB search
MSLPPRNSSDNRSPKRQRFPPPPPVPEEEEEEEESDESVDDDEEEDYSDDSADEEGDEDE
DEEDDVQAAAADAGVGVPMMARRTGGTALRNTVTEAQSRRSVSISSSSPSSSSSQLSITL
KSSDLDCPTCLEPLKGPIYQCRNGHITCSACLNKVHKKCPACRIPIGDIRCRAMERVIES
SVVPCCNAVYGCKETSSYGNGSAHEEVCVYVRCFCPLPNCSYTGAYKDLQTHALNTHSWD
VENLIPFEFDYAQIFSMNLAKSKTALFQEEKEGDLIVVQAVKGTHGGVCVTASHIAPSTL
GLRNLSCSLAKLNAYTTLRIGLMVKKIQKVREPEEPKEDFLFIPDYMLSDDHLKMQICVG
NELSYAHI
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttccgccgcgaaactcctccgacaaccgttccccgaagaggcaacgcttccct
cctcctccgcctgtccccgaagaggaggaagaagaagaagaaagcgacgaaagcgtcgat
gacgacgaggaagaagattacagcgacgatagcgccgatgaggaaggagacgaagacgaa
gacgaagaagacgacgtccaagccgcggcggcggacgctggcgtcggcgtcccgatgatg
gccagacgtactggtggtaccgctctcaggaatacggtgacggaggctcagtcgagaaga
tccgttagcatcagcagcagcagcccgagctcctcgtcgtcgcaactgtccattacgctg
aaaagctccgatctcgattgtcctacttgtctcgagccactcaagggccccatctatcag
tgtcgtaacgggcatataacctgttctgcgtgcctgaacaaagtgcataagaaatgcccc
gcctgtaggataccaatcggtgacattagatgcagggccatggagagggtcatcgaatca
tctgtcgtcccctgctgtaacgccgtttacgggtgtaaagaaacctcgtcgtatgggaac
ggatcggcacacgaggaggtgtgcgtgtacgtccgttgcttttgccctttaccgaactgc
agctacactggcgcatacaaggatcttcaaacccacgctctcaatacgcactcttgggat
gtggagaacctcatcccgtttgagtttgactatgctcagatttttagcatgaacctggct
aagagtaagacggctctttttcaggaagagaaagagggtgatttgatcgtggtgcaggct
gtcaaagggacgcacggtggtgtttgtgtgaccgcgagccatatcgcgccttcgactctt
ggattacgcaacctctcgtgcagtttggctaaactcaatgcgtatacaacactgaggatc
gggttgatggtgaagaaaatccagaaagtgagagagccagaagagcccaaagaggacttc
ttgtttattccggattatatgttgagtgatgatcacttgaagatgcagatttgcgttgga
aatgaattgagttatgctcatatctaa
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