Raphanus sativus (radish): 108836541
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Entry
108836541 CDS
T06014
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108836541
09123 Folding, sorting and degradation
03018 RNA degradation
108836541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108836541
03041 Spliceosome [BR:
rsz03041
]
108836541
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108836541
mRNA degradation factors
5'-3' decay
Lsm complex
108836541
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108836541
Complex C
U2 snRNP components
108836541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
108836541
NCBI-ProteinID:
XP_018465192
UniProt:
A0A6J0LS67
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Position
8:complement(178302..179322)
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AA seq
93 aa
AA seq
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MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcttacttcaaggatttggttggacaagaagtaacggttgagctgaag
aacgatctagcaatcagagggactcttcattcagttgatcagtacctcaacatcaagctc
gagaacactagggttgttgatcaggacaagttccctcacatgctttcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtacagttacctcctgatggagtcgatgttgat
ctacttcatgatgccgctagaagagaagctagaggcggttaa
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