Raphanus sativus (radish): 108836586
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Entry
108836586 CDS
T06014
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108836586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108836586
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108836586
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108836586
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108836586
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108836586
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108836586
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108836586
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108836586
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108836586
Exosomal proteins of other body fluids (saliva and urine)
108836586
Exosomal proteins of breast cancer cells
108836586
Exosomal proteins of colorectal cancer cells
108836586
Exosomal proteins of bladder cancer cells
108836586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Ribosomal_L29
AKAP7_RIRII_bdg
Motif
Other DBs
NCBI-GeneID:
108836586
NCBI-ProteinID:
XP_056860645
UniProt:
A0A9W3D9T8
LinkDB
All DBs
Position
3:11066690..11069288
Genome browser
AA seq
585 aa
AA seq
DB search
MASTNALSSASLLCSSRQGKLIGGNEQKGERVSYRKASRRFSIRANVKEISFDQNSRAAL
QAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREV
ASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKKARP
VKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDR
GYISPQFVTNPEKLLVEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDVTGE
ALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYQALDMGLLVENTTIDQL
GIARKVTISKDSTTLIADAASKDELQARISQLKKELFETDSVYDSEKLAERIAKLSGGVA
VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDAD
ERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDNYENLLEAGVID
PAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAPPQGLMV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacaaacgctctctcttccgcctccctcctctgctcctcacgacagggaaag
ctgattggtggaaatgagcagaaaggtgaaagagtaagctacaggaaagcaagcagacgt
ttcagtattagagctaatgtaaaggaaatctctttcgaccagaactcaagagctgctctt
caagctggcattgacaagcttgctgatgctgttggtctcactcttggccctagagggaga
aatgttgtgctggatgagtttggaagccccaaggttgtgaatgacggagtcaccattgct
agggctattgagttacctgatgctatggagaatgctggtgcagcgcttatccgtgaggtt
gctagtaagactaatgactcagctggtgatgggacaacaactgcatctgtccttgctagg
gaaataatcaaacacggattactgagtgtcacttctggcgccaatcctgtttccctcaag
aggggaatcgataagactgtccaagctttgatcgaagagcttgagaagaaagctagacct
gtcaaaggtggtagtgacatcaaagcggtggctacaatctctgctggaaatgatgagctt
gtgggaacaatgattgctgatgccattgacaaagttggacctgatggtgttttgtccatt
gaatcttcatcctctttcgagactacggtcgaagttgaagaaggaatggagattgacaga
ggttacatctcacctcagtttgttacaaaccctgagaaactactagttgagtttgagaat
gcgcgggtgttgatcactgatcagaagatctccgcaatcaaagacatcatcccaatcttg
gagaagaccactcagcttcgagctccattgctgattattgcagaggatgttacaggtgaa
gccttagcaacccttgtcgtgaacaaactccgtggtgtcctcaatgttgtcgccgtgaaa
gctcctggatttggagaaagaagaaaggctatgcttcaagatatagcaatcttgacagga
gccgagtatcaagcccttgacatgggcttgctggtcgaaaacacaaccatagatcagttg
ggtattgctcgtaaagtcaccataagcaaagattcgactacgctcattgcagatgcagct
tccaaggacgagttacaagctcgtatctcccagctgaagaaagaactattcgagactgat
tctgtctatgactcagagaagctcgctgagagaatagctaaactctctggtggtgttgct
gtcattaaagtcggagcagcgactgaaactgagcttgaggaccgtaagcttcgtattgag
gacgcaaagaacgctacatttgctgctatcgaagaaggtatagttcctggtggtggtgcg
actttggtgcatctctcaactgtgattcctgccattaaagagaagctggaggatgctgat
gaacgtctgggagctgacatagtacagaaggctttggtggcaccagctgcacttattgct
cagaacgctggaatcgaaggagaagttgtagttgaaaagattatgttcagtgaatgggag
atagggtacaacgccatgactgataactatgagaatctgttggaagctggagtgattgat
ccagctaaagtcacgagatgtgcgcttcagaacgctgcatcggttgcaggaatggtactg
acaactcaggccattgttgttgacaaaccgaaacctaaggctcctgctgctgctcctcct
cagggtctcatggtgtaa
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