Raphanus sativus (radish): 108836638
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Entry
108836638 CDS
T06014
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108836638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108836638
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108836638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
PRP4
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_Vps41
eIF2A
WD40_like
Beta-prop_SPT8
STELLO
Motif
Other DBs
NCBI-GeneID:
108836638
NCBI-ProteinID:
XP_056845103
UniProt:
A0A9W3C0S5
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Position
6:complement(51251482..51254139)
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AA seq
532 aa
AA seq
DB search
MEPNKEDNAQITAAPVPGVSTIPPMAPIPMVQHPPPLARPPTFRPPQNGGDKASDSDSES
EDEHYVISEESKQVRERQEKAMQELLIKRRAAAIAVPTNDRSVRDRLRRLGEPITLFGEQ
EMERRARLAQLMARLDIGGQLDRLLQAHEEDAAPKEEVEDEELQYPFFTEGPKELREARI
DIAKFSVKRAAVRIQRAKRRRDDPDEDVDAETKWALKQAKGMVLDCSNFGDDRPLTGCSF
SRDGKILATCSLSGVTKLWEMPQVTNKIAVLKDHKERATDVVFSPVDDCLATASADRTAK
LWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDINTGSELLLQEGHSRS
VYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIKPVLSVNFSPNGYHLASGGE
DNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKS
LAGHESKVASLDITTDSSCIATVSHDRTIKLWTSSSNEEEEDRGGETMDMDL
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaaggaagataacgctcagatcacagcagctccagttccaggcgtctct
actataccaccaatggctccaataccgatggttcaacatcctccaccacttgcacgtcca
cctactttcaggccaccacaaaacggtggagacaaagctagcgactcggattctgaatca
gaggatgagcattacgtgatatctgaagagagtaagcaggtcagagaaagacaagagaag
gcaatgcaggagttgcttataaagcgtcgtgctgctgctatcgcagtgccaacgaacgac
agatctgttagagaccggcttagacggcttggggagcctattactctatttggggaacag
gagatggagagaagagctaggttggctcagcttatggctaggcttgatatcggcgggcag
ttggatagactgcttcaggctcacgaggaagatgcggctccaaaagaggaagtggaagat
gaagaacttcagtacccttttttcactgaggggccaaaggagcttagagaggctagaata
gatattgccaagttttctgtgaagagagctgctgtaaggattcagcgtgcgaagcggagg
agggatgatcctgatgaagatgtggatgcagagactaagtgggctttaaagcaggctaaa
ggaatggttcttgattgcagtaactttggggatgatcgtcctttaactggctgctccttc
tcaagagatggaaagatacttgccacatgttctctaagtggagtcactaaattatgggag
atgcctcaagttacaaacaagattgctgtgttgaaggatcacaaagaacgtgcaactgat
gtagtgttctcccctgtggatgattgcctagcaactgcttctgctgatcgaactgcaaag
ttgtggaaaactgatggaacgctcctacaaacgtttgaaggtcatttggatcgtcttgca
cgtgttgccttccacccatcagggaagtacctcgggacaacaagctttgacaaaacatgg
agattgtgggatattaacacaggatcagagctgctgttgcaagaaggccacagtcgcagt
gtctatggaattgcattccaacaagatggagcattagcagcttcctctgggcttgattcg
cttgcacgggtttgggatctccgcactggtaggagtattctcgtcttccaaggacacatc
aaaccggttctctcagtgaacttctctccgaatggatatcacttagcatctggtggtgag
gataatcagtgccgtatttgggatttaagaatgagaaagtcattgtacattataccagct
catgctaaccttgtgtctcaagtgaagtatgaaccacaagaaggctacttcctggccact
gcatcatacgacatgaaagtcaatatatggtcaggcagagatttctcgcttgttaaaagc
ttagcaggacacgaatcaaaagtcgcctctctagatatcactacagatagctcgtgtatc
gcaactgtatcacacgaccgtaccatcaagctttggacaagcagtagcaacgaagaagaa
gaagatcgaggcggggaaacaatggacatggatctctag
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