Raphanus sativus (radish): 108837389
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Entry
108837389 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 6
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108837389
09123 Folding, sorting and degradation
03018 RNA degradation
108837389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108837389
03041 Spliceosome [BR:
rsz03041
]
108837389
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108837389
mRNA cycle factors
Stress granule specific factors
108837389
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108837389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_RdRP1_2
RRM_PARP14_3
DUF3918
Motif
Other DBs
NCBI-GeneID:
108837389
NCBI-ProteinID:
XP_018465946
UniProt:
A0A6J0M2Q6
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All DBs
Position
5:complement(6614211..6616696)
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AA seq
594 aa
AA seq
DB search
MCIHTHTHITTKDLSASLSSSPSSSRATMAAAIAKPEMQPQVNVQQSSTLASLYVGDLSP
DVTEADLTAKFSLTVPVVSVHLCRNSVTGKSLRYAYVNFDSTITASNAMACLNHTDLKGK
TMRIMWSQKDVAYRRRSGLGNLFVKNLDSSITSSCLERMFSPFGVILSCKVAEENGQSKG
FGFVQFDTEQSAVAARLASHGSMVDGKKLFVAKFIKKGERAAMSGVNQEFTNVYVKNLVE
SVTEDYLHTMFSQCGTVSSVVVMRDGVGRSRGFGFVNFCHPENAKKAVETLNGRLLGPKK
LFVGRALRKAERLEMLKQEHKGNFVAKFNVGWPKLYVKNLNGSMDETRLRDIFGRFGKIV
SAKVVRDENGKSKGFGFVGFSTLDESKHAKRELHGFLVDGKSLVVRVAERKEDRFKRMQQ
YHRVRAHMQAPPVPAPVQPVPPQYYGVQPRNYTQALPVPSQAQPVPPSMSSPYGYLPQPF
HIGAYYYPMATQLPQMMSHRNMTAYVPAGQAHLKEKRTVQLVYKRPGYNTLAKSGAKQKL
VFKGQGDKTVEAGTCSTKAKTSAEKRKEVSSHLMAMLTPNRNAASESLAPLKVA
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatacacacacacacacacataacgacgaaagacctctctgcttctctctcgtct
tctccctcttcctcacgagcaaccatggcggcggcgatcgcgaaaccggaaatgcaaccg
caagtaaacgtccaacagtcctcgactctcgcctcgctttacgtcggcgatcttagcccc
gacgtcacggaggccgatctcaccgccaaattctccttgactgtccccgtcgtctccgtc
catctctgccgcaactccgtcaccggaaaatcactccgttacgcttacgtcaacttcgat
tcaaccatcaccgcatcgaacgctatggcatgcttgaaccacactgatttgaaagggaag
acgatgcggataatgtggtctcagaaagacgttgcgtaccgtcgtcgtagcggattgggg
aacctcttcgttaagaatctcgacagctccatcaccagcagttgcttggagcggatgttt
agtccctttggagtcatactttcttgcaaagtcgccgaggagaatggccagagtaaaggc
ttcggttttgttcagttcgatacagagcaatccgctgttgctgctcgtcttgcatcccac
ggctctatggttgatggcaagaaactgtttgtagcgaagtttattaagaaaggtgaaaga
gcagctatgtctggggtgaatcaagagttcacaaacgtttatgtgaagaatttggtggaa
agtgttacagaggattatctccatacgatgttttctcaatgtgggacagtctctagtgtt
gtggttatgagggatggtgtgggaagatcaagaggtttcgggtttgtcaacttctgtcat
ccagagaatgcaaagaaggctgtggaaactctcaacggacgtttacttggtccgaagaag
ctgtttgttggaagggctctgagaaaagctgaaaggttggagatgctgaaacaagagcat
aaaggcaactttgttgccaagtttaatgttgggtggcctaagctgtacgtgaagaacttg
aatggatcaatggacgaaacaaggctgcgagacatatttggaagatttgggaagatagtc
tcagcaaaagtggttcgtgatgaaaatggcaaaagtaaaggattcggctttgtgggtttc
tctacccttgacgagtccaaacatgctaaaagagagctccacggttttttagttgatgga
aagtcacttgttgttcgagttgctgaacgcaaggaggatcggttcaagaggatgcagcaa
tatcatcgagtacgagctcacatgcaagctcctcctgtacctgcaccagttcagccagtc
ccaccgcaatattatggagtgcagccacgcaattacactcaagctcttcctgtcccttca
caagctcagccagtcccaccgtctatgagcagcccatatggttatttgccgcagccattc
catattggagcatactattaccctatggccactcagttaccacagatgatgagtcaccga
aacatgactgcctacgttcccgctggtcaagctcatctaaaggagaaaagaacagttcaa
ctagtctacaaacgcccgggttacaacaccttagccaagagtggtgcgaaacagaaactg
gtctttaaggggcagggtgacaaaactgtagaggcagggacttgctctaccaaagcgaag
acatctgctgaaaaacgtaaagaagtatcatcgcatttgatggcaatgttgacaccaaat
aggaatgctgcttcagagagcttagcaccacttaaagttgcttaa
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