Raphanus sativus (radish): 108837608
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Entry
108837608 CDS
T06014
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
108837608
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rsz04040
]
108837608
Ion channels [BR:
rsz04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108837608
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
DUF6525
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
108837608
NCBI-ProteinID:
XP_018466141
UniProt:
A0A6J0M3A6
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Position
5:7195969..7199486
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AA seq
760 aa
AA seq
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MEKDDVPMLPVSDSSSASRSTTRPFTSRSRSVSHANTSSTIDGFDSSTVVLGYTGPLRTQ
RRPPPPLVQMSGPLSSTRSPDPLFLPPPTGDVPSSQTERYPSFPPLEHKNSEEEFVLKHA
HLLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSAIFDSTFHNHLYDDAKGWARRFAT
SVNRYLPGIMNPHSKFVQSWTKFFALSCLLAIFIDPLFFFLILVKQKDKCIVIDWPMATA
FVAVRSVTDVLFSVNILLQFRLAYVAPESTVVGAGQLVDHPRKIARHYFRGKFLLDLFIV
MPIPQILILWIIPAHLGISGANYAKNLLRAAVLFQYIPKLYRLLPLLAGQTPTGFIFESA
WANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRDACGNSDHECRALIDCRPGNSGGSL
AAWRSNASAVACFQEDGFPYGIYLKAVNLTGHSSLFTRYSYSLFWGFQQISTLAGNQVPS
YFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQSLGRRNLEMTLRRRDVEQWMSHRRLPED
IRKRVREAERFNWAATRGVNEELLFKNMPDDLQRDIRRHLFIFLKKVRIFSLMDKAVLDA
IRERLKQRTYIRSSMVLHRGGLVEKMVFIVRGEMESIGEDGSVLPLSEGDVCGEELLTWC
LERSSVNPDGTRIKMLTKGCVSYRNVRCVTNAEAFSLSVADLEDVTSLFSRVLRSNRVQG
AIRYESPYWRLRAARQIQVAWRYRRRRLQRLYTDQSSYSL
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagatgatgttcccatgcttccagtttcagactcatcatcagcatcccgtagt
actactaggcctttcacttccaggtcacgtagcgtttcccacgcaaacacttcttcaacc
atcgacggtttcgatagctcgactgttgttttgggctacacaggtcctcttcgaacacag
aggaggcctcctcctcctttagttcagatgagtggccctctttcatctactcgcagtcct
gacccactctttcttcctcctcctactggtgatgtcccctcctctcaaactgagaggtac
ccttctttccctcctctcgaacacaaaaactcagaggaagagtttgtgttgaaacacgca
catctcctgagatctggacagttggggatgtgtaatgatccgtactgtaccacttgccct
tcttactataaccggaaagctgcccaaatccctacttctagagtttctgctatttttgat
tccactttccataatcatctgtacgatgatgccaaaggttgggctaggcggtttgcaaca
tctgttaatagatacttaccaggaatcatgaatcctcactccaagttcgttcagagttgg
actaagttctttgccctttcatgcttgttggctatttttatagatcctctcttcttcttc
ctcatattagtcaaacagaaagacaaatgcattgtgatcgactggccgatggctacagcc
tttgtagctgttagaagtgtaacagatgttttattctctgtaaacattcttcttcagttc
cgattagcctatgtagctcctgagtctacggttgttggtgctggccagttggttgaccat
ccaagaaaaattgctagacattatttccgaggaaagtttttacttgacttgttcatagtc
atgccaattccacagatattgatattatggatcataccagcacacttgggcatatctggg
gcaaactatgcaaagaaccttttacgcgctgcggttctcttccaatacattccaaagtta
tataggctgctgccactacttgctggacaaacaccgactggcttcatctttgagtcggct
tgggctaattttgttattaaccttctcactttcatgcttgctggtcatgtcgttggctct
tgttggtatctttttggtctgcagagagttaatcaatgccttcgagatgcttgcggtaat
tctgatcatgaatgtagagctcttatagattgtcgtcctggaaatagcggtggatcgtta
gctgcgtggagaagtaacgcgagtgccgttgcttgttttcaagaagatggttttccttat
ggaatctatttgaaggcagtcaatctcaccggtcattctagcctcttcacaagatatagt
tactctcttttctgggggttccagcaaatcagcacgcttgctggaaaccaagtcccaagt
tactttcttggggaagtcttcttcaccatgggcattattggtctggggcttttgcttttc
gctcttcttattggcaatatgcagaacttccttcaatctctcggtcgaaggaatttggaa
atgactctgagacggcgtgatgtagagcaatggatgagccatagacggttgccagaagat
ataagaaagagggtgcgagaggctgaacggttcaactgggctgctactagaggagttaac
gaagaattgctatttaagaacatgcctgatgatcttcaaagagatataagacgacatctc
tttatatttcttaagaaggtgaggattttttcgttgatggataaagcagtcttagatgct
atacgtgagaggctgaaacaaaggacttacataaggagtagcatggtcttgcaccgagga
ggtttagttgagaaaatggtattcattgtgagaggtgagatggagagcattggagaagac
ggttctgttctgccattgtcagaaggagacgtttgtggtgaagaacttctcacttggtgc
ctcgaacgctcttctgtaaaccctgatgggacaaggataaagatgctgacaaaaggttgc
gttagctacagaaatgttaggtgtgtgacaaacgcagaggcgttctcgctgagtgtagca
gatcttgaagatgtaacgagcttgttctcaagagtcctaaggagcaatcgagtgcaagga
gccataaggtatgagtctccttattggaggctaagagcagctaggcagattcaagtggct
tggagatatcgtaggagacggcttcagagattgtacactgatcagtccagttacagtctt
tag
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