Raphanus sativus (radish): 108837734
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Entry
108837734 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108837734
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108837734
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
108837734
NCBI-ProteinID:
XP_056856867
UniProt:
A0A9W3CZ92
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All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MKSSYHPQRMEIIVRVVFMLTLVNFGFVNGQIYDVLKFGAKGDGTTDDSKYNIAFVEAWK
AMCSSGGNNKTLLIPSDNTFLLQPLVFQGPCNSPYVQVQLEGKIVAPLNKEAWSDLKSCE
WVSFNKIIGLTVLGSGTINGRGSSFWEDNTPASKHPTQLHFQGCNNLEINGITSFDSPRN
HISINDCRQVKITQIKLIAPGDSPNTDGIDISASTDVEIYDTMVGTGDDCVALNSGSINI
SITRMQCGPGHGISVGSLGKDGEESIVENVQVTNCTFNETNNGARIKTWPNGKGYARNIV
FKDIILTETKNPIIIDQQYIDKGRIDVEESSAVAISNVTFVDFRGTSRQDEIIKIDCSEV
TSCKDIVLDRIDITTIDGKKPIIECSNAYGNSTNAYDGCLKTQ
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcgtatcatcctcagagaatggaaatcatagtacgtgttgtgttcatgttg
acgttagtcaattttggatttgtaaatggtcaaatctatgatgtccttaaatttggtgct
aagggagatggtactaccgatgattcaaagtataatattgcttttgttgaagcatggaaa
gctatgtgcagtagtggtgggaataataaaacactccttattccttcagataataccttt
ttactacaacctctagtgtttcaaggtccttgtaactctccatatgtacaagttcagttg
gaaggaaagattgtcgcccctcttaacaaagaagcatggtcagatttgaagtcatgcgaa
tgggtcagttttaataaaatcatcggtctaacggtccttggttcaggaacaatcaatgga
cgtggttcatctttctgggaggacaatacgccagcttctaaacaccctactcaattgcat
tttcaaggatgcaataatcttgaaataaatggaataacctcattcgatagcccgagaaac
catatctcaatcaacgattgcagacaagtcaaaatcacccagataaaacttattgcgcct
ggtgatagtcctaacaccgatggaattgatatttcagcatcaactgatgttgaaatatat
gacactatggttggaacaggagatgattgtgtagctttgaacagtggaagtataaatatc
tccatcacaaggatgcaatgtggtcctggacatggaataagtgtgggaagtttaggaaaa
gatggagaagaatctatagttgagaacgtccaagtgactaactgtactttcaacgagacg
aacaatggagcgagaattaagacatggccgaacggaaaaggatatgcaaggaatatagtt
ttcaaggatatcatactcactgaaaccaaaaatccaattataatcgatcaacagtatata
gacaagggacgtattgacgtagaggaatcatcagcagtggccattagcaacgtgacattc
gtggattttcgtggaacgtcacgacaagatgagattataaagatagattgcagcgaagtc
acatcttgcaaagatatcgttctagatagaattgatattactacgattgatggaaagaag
ccaataattgaatgcagtaacgcgtatggaaattcaaccaatgcttatgatggttgtttg
aagacacagtaa
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