KEGG   Raphanus sativus (radish): 108838667
Entry
108838667         CDS       T06014                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108838667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108838667
   03036 Chromosome and associated proteins [BR:rsz03036]
    108838667
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     108838667
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     108838667
    COMPASS/SET1 complex (yeast)
     108838667
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_Vps41 WDR90_beta-prop_4th Cytochrom_D1 Beta-prop_NUP159_NUP214 eIF2A KNTC1_N Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR35_TULP_N WD40_like
Other DBs
NCBI-GeneID: 108838667
NCBI-ProteinID: XP_056844559
UniProt: A0A9W3BZ88
LinkDB
Position
6:11421939..11424114
AA seq 372 aa
MGLYIYKSAPQNRKNRRGIFVRDCSGAGECSEITGGAMVGGAQGEREERVSLELSEELVR
SMEPGAVFRDYNCRISSIDFNKNSSYMVTASDDDSIRLYDVATATCMKTVNSKKYGVDLV
CFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSAGESFISGSLD
RTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLVFTIAFGGYIRMFDSRMYHKGPFEIFSV
GGDLSEANVVKFSNDGRFMLLTTMDGHIHVLDSFRGTLLSTYSVKPVAEESTLDATFSPD
GMYVVSGSGDGSAHAWSVRSGKQVQSWMGGHGSEAPPVIKWAPGSPMFVTGSSELAFVIP
DLSKLSAYANRK
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgggcctttatatttataagtcagccccccaaaatcgaaagaataggcgggggatattt
gttagggattgttccggggcgggggagtgtagcgagatcaccggcggagcaatggttggg
ggggcgcaaggggagagagaggaaagagtatcgttggaactgagtgaagaattagtaagg
agcatggaacctggcgctgttttcagagactataattgcaggatcagctcgattgacttt
aacaaaaattcgagttatatggtgacggctagcgacgatgactccattcgtctctacgat
gttgctaccgctacatgcatgaagacggtgaacagcaaaaagtatggggttgatctggtt
tgcttcacatcgcatcctaccactgtcatctactcttcccgtaacggctgggacgactct
ctgcgtcttctctctttgcacgataacaagtatttgcgctacttcaaaggacatcatgac
agagttgtttcgcttagcttgtgttctgctggtgaatccttcatctccggttctcttgat
cgaactgttttgctttgggatcaaagagtcgagaaatgccagggtctcttacgagtccaa
ggaaggcctgctgcagcttatgatgatcaaggtttagtttttactattgcctttggtggc
tacatcagaatgtttgattcccgtatgtaccataaggggccttttgaaatattctccgtt
ggtggtgatctttctgaggcaaacgttgtcaaatttagtaatgatggaaggttcatgctg
cttacaaccatggacggtcatattcacgtgcttgactcttttcgtggaacactcctatcc
acttatagtgtgaaaccagtggctgaagaatctacattggatgcaaccttcagtcctgac
gggatgtatgttgtttcaggttcaggagatggtagtgcccatgcatggagtgtgaggagc
ggaaaacaggttcagagttggatgggtggtcatgggagtgaagcccctccggtaataaaa
tgggctccaggaagtcccatgtttgtgacaggctcatccgagcttgcttttgttatccct
gacttatctaaattgtctgcttatgccaatcggaaataa

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