Raphanus sativus (radish): 108839595
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Entry
108839595 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108839595
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108839595
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108839595
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
CBM_11
NOMO1-like_2nd
Motif
Other DBs
NCBI-GeneID:
108839595
NCBI-ProteinID:
XP_056859744
UniProt:
A0A9W3D7J5
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Position
2:38716073..38719724
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AA seq
663 aa
AA seq
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MRFGKEKMILQNIASSSMICFLLLLLLPRNGISARAPTVQQIRSRHGTREVVVDNGIIRV
SFSSPQGLITSIKYKGIDNVLNPRVRTRGYWDITWQGENIRGLDGIEGTNFRIITQNEEQ
VEISFSRTWNGGSKHIPLNIDKRYIIRTNTSGIYAYGVFERLSEWPEVEMGQVRIVFKLN
TDRFRYMVVADNRQRQMPTDNDRDIHRGHAKALAYKEAVQLTRPNDIRFKNQVDDKYQYS
CEVKDNKVHGWISTKSHVGFWLISPSGEYRSGGPSKQELTSHVGPTAITSFTSGHYVGRD
METRYKTDEAWKKVMGPVFIYLNSDSTGNNPRHSLWEDAKRQTEEEVQAWPYDFVASSDF
PSRQERGTVTGRLLVNDRFLTPAQSAYIGLAPPGEAGSWQTNTKGYQFWTHTNETGYFTI
DNVRPGTYNLYGWVPGFIEDFQYQNRVDIAAGSQISLDRVVFKPPRNGPTLWEIGVPDRT
AREYFVPEPYKDTMNPLYLNHTDKFRQYGLWQRYTELYPNHDLVYTVGVSNYSQDWFYAH
VTRNIDKSTYVPTTWQIVFQLPYVNWRGSYTLQLALASAARANLQVRFNNEYSRPLLSTG
NIGRDNAIARHGIHGVYRLYTINVPGRLLRTGTNTIYLRQAKATGPFEGLMYDYIRLEAP
SRA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagatttggtaaagagaagatgattttgcagaatatagcttcttcgtcgatgatctgt
ttccttctgttgcttcttcttccaaggaatggaataagtgcaagagctccaacagtgcag
cagataagaagcagacatggaactagagaggtggtagtggacaatgggattatcagagtc
agtttctctagtcctcaaggacttataactagcatcaaatacaaaggaatcgataatgtt
cttaacccacgtgtccgaactcgagggtattgggacataacatggcaaggagaaaacatt
cggggcttggatggaattgaaggaaccaactttagaattataactcaaaacgaagaacaa
gtggagatttcattctcaagaacatggaatggtggttctaaacatattccactaaatata
gataaaaggtatattatacgaacaaatacgtcaggaatctacgcatacggagtcttcgag
agactttccgaatggccagaagtcgagatgggtcaagttcgaatagtattcaaactcaac
actgatagattccgttacatggtggtggcagataatcggcaaagacaaatgccaactgac
aatgaccgtgacatccaccgtggccatgccaaggctcttgcttacaaagaggctgtacaa
ttgactcgtcctaatgacattaggttcaaaaaccaggtggatgataaataccagtactca
tgtgaggtcaaggacaacaaggtgcatggttggatctcgaccaagtcccatgtcggtttc
tggctcatctccccgagtggcgaataccgctcgggtggacctagcaagcaggagctcacg
tctcacgtcggtcccacggccatcaccagctttacaagcggacattatgttggtcgagac
atggagacaaggtacaaaactgatgaagcgtggaaaaaggtcatgggacctgttttcatt
tacttaaactctgattctactggcaataatccacgacattcattatgggaagatgctaaa
cgacagactgaagaggaagttcaagcctggccgtatgattttgtagcatcctctgacttt
ccttctcgtcaagaaagaggaactgttaccggtcggctcttagtcaacgacagattcttg
actccggcacaatctgcatacatcggtttagcaccgcccggagaagctggttcatggcag
acaaatactaagggatatcaattttggacacatacgaacgaaaccggatatttcacgatt
gacaacgttagaccgggaacttacaatctgtacggatgggttcccggttttatcgaagat
tttcaataccaaaaccgtgttgacatagctgcgggttcacagataagtctcgacagagtc
gtgttcaagcctccgaggaatggtccaacgctgtgggagattggtgtaccggatagaacc
gctagagaatactttgtaccggaaccatacaaggatacaatgaatcccttatacctaaac
cacactgataagtttaggcagtatgggttatggcaacgatacacagagttatatccaaat
catgatctcgtctacacagttggagttagtaactacagtcaagactggttctacgctcat
gtcacaaggaacatagataagtcgacctatgtaccaacgacatggcagattgtgtttcaa
cttccatacgtgaactggcgaggtagctacacattgcaactagctttagcctcggcggca
cgagctaacttacaagtccggttcaacaacgaatactcaagaccattactctcaacgggt
aacatcggaagagataatgctatagctagacatggaatccatggagtctataggctctac
accatcaatgttcctggaaggttactaagaaccgggaccaacactatttatctacgtcaa
gctaaagcgacgggacctttcgaaggtcttatgtatgactacattcgtcttgaagcgcct
tccagagcttag
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