Raphanus sativus (radish): 108839756
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Entry
108839756 CDS
T06014
Name
(RefSeq) coatomer subunit alpha-2
KO
K05236
coatomer subunit alpha
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108839756
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108839756
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108839756
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108839756
Exosomal proteins of bladder cancer cells
108839756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
TPR_COPA_B
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Fis1_TPR_C
SPO22
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
108839756
NCBI-ProteinID:
XP_018468034
UniProt:
A0A6J0M7M4
LinkDB
All DBs
Position
2:38499993..38504837
Genome browser
AA seq
1220 aa
AA seq
DB search
MLTKFETKSNRVKGLTFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH
NSQPLFVSGGDDYKIKVWNHKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKTVSPADDLMR
FTQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWE
VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAVHP
EINLLAAGHDNGMIVFKLERERPAFALSGDSLFYVKDRFLRYYECSTQKDSQVIPIRRPG
TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF
IARNRFAVLEKSTSQVLVKNLKNEVVKKSSLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ
QRLVLGELQTPFVRYVVWSNDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAITINATEYI
FKLALLRKRYDHVMGMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERVRFNLALESGNI
SVAVASATEINEKEQWYRLGVEALRQGNAGIVEFAYQQTKNFERLSFLYLITGKLDKLSK
LMKIAEVKNNVMGQFHNALYLGDVKERVKILEKAGHLPLAYITASVHGLKDVAERLATEL
GENVPSLPEGKTPSLLMPPSPVMCGGDWPLLRVMKGIFEGGLESGTRGGAVDEEEEDAGG
DWGDALDMVDVDGMENRDIDAILEEAERGEEENDEEGGWEELEGLDLPPELDTPKASANA
RSSVFVTPTQGMPVSHIWSQKSSLAAEQAAAGSFDTAMRLLNRQLGIKNFAPLKSMFIDL
FSGSHSYLRAFSSSPVVSLAIERGWSESSSPNVRGPPSLVYDFSQQEEKLKSGYKATTSG
KLTEALRLFLSILHTIPLVVVESRSEVDEVKELVTIVKEYVLGLKMELKRRETKDDPVRQ
QELAAYFTHCNLQLPHLRLALFSAMGVCYKSKNLATAYTFAKRLLETNPMESQAKTARQI
VQAAERNMTDTTELNYDFRNPFVICGSTYVPIYRGQKDVSCPYCTARFVPSQAGNICGVC
DLAVIGADASGLVCSPSQVR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagttcgagacaaagagtaacagagttaagggcctcaccttccaccctaaa
cgaccatggatcctcgccagtttgcacagtggtgtgatccagctctgggattatcgtatg
ggtactctgatcgaccgatttgacgagcacgaaggacctgttcgtggtgttcattttcac
aattctcagcctctcttcgtctccggaggtgatgattacaagattaaagtttggaaccac
aaaacacacaggtgccttttcactcttctcggccatctcgactatatccgcactgtccaa
tttcaccacgaaaacccctggattgtcagtgctagtgacgaccagactatccgcatttgg
aactggcagtcacggacttgtatttctgtgctcactggccacaatcactatgttatgtgt
gcttctttccatcctaaagaagaccttgtcgtgtctgcatctctggatcagactgtccgc
gtctgggatattggttctcttaagaagaagactgtttctcctgctgatgacctcatgcga
tttactcagatgaactctgatctttttggtggtgttgacgctattgttaagtacgtcctc
gaaggtcatgatagaggagttaactgggcttcttttcatcccactcttcctctcatcgtc
tctggtgctgatgaccgccaagttaagctgtggcgtatgaatgaaactaaagcttgggag
gtggatacactgcgaggccacatgaataatgtgtcatctgtgatgttccatgcaaaacag
gacataattgtatccaactctgaggataaaagtattcgtgtctgggatgctaccaagcga
actggaatccagacttttcgccgtgaacatgatcgattctggattcttgcagttcaccct
gagattaacttactggcagctgggcatgacaatggtatgatcgtcttcaaacttgagaga
gaacgccctgcatttgccttgagtggtgattctttgttctatgtcaaagatagatttttg
aggtactacgaatgttcaactcagaaagattcccaagttatccctataaggcgtcctggt
actcctagcttgaatcaaagtccaaggactctgtcatacagtccgacggaaaatgctgtt
ttgatctgctctgatttggatggtggctcttacgagttgtacatcataccgaaagatagt
gttggcaggagtgacgttgtgcaagatgcaaagagggggacaggtggttctgccgtattc
attgcccgtaaccggtttgctgttcttgaaaaaagcaccagccaggtgctagtcaagaat
ctcaagaatgaggtggttaaaaagagttctctgcctatacccacagatgctatcttttat
gctgggactggaaatttgctctgtagatctgaggataaagtggttatatttgaccttcag
caaaggcttgttcttggtgaacttcagacaccgtttgttaggtatgttgtttggtctaat
gatatggagagtgttgctttgctcagcaagcatactattattattgcgagcaaaaaactt
gtcctccagtgcacgcttcatgagacaatacgtgtgaagagtggagcttgggatgacaat
ggtgtcttcatttacacaaccttgaatcatatcaagtactgtcttcctaatggagatagt
ggaatcatccgaaccctggatgtccctatctacatcacaaaggtttctggaaatacaatc
ttttgcttggaccgggatgggaaaaacagggcaatcaccatcaatgcaactgaatacatt
ttcaagcttgcactgctgaggaagagatatgatcatgttatgggcatgataaagaactcc
cagctatgtggacaggctatgattgcttacctgcagcagaaaggattccctgaagttgcc
ctccattttgttgaagacgagagagtccgattcaacctggctcttgaaagtggcaacatt
agcgtcgctgttgcatccgctacagagataaatgagaaagagcagtggtatagacttggg
gtggaggctcttcgccaaggtaatgctggaattgttgaatttgcttaccagcagacaaag
aactttgagaggttatcttttctatatctcattactggtaagttagacaagctttcaaag
ttgatgaagattgcggaagtgaagaacaatgtaatgggtcagtttcacaatgcactctac
ctaggagatgtgaaagagcgtgtcaagatacttgagaaagctggtcatttgcctctcgct
tatatcactgcttcggttcatggtttaaaggacgttgctgagagactggcgactgagcta
ggagagaacgtgccttcattgcctgaagggaaaactccatcgcttctaatgccaccatct
cctgtcatgtgtggtggtgattggcctcttctaagagtgatgaagggaatatttgaaggc
gggcttgagagtggaaccaggggaggggctgttgatgaggaagaagaagatgctggtggt
gattggggggatgcacttgacatggtcgatgttgatggaatggagaacagagacatcgat
gccattttggaggaagcagaaagaggagaagaagaaaatgatgaagaaggtggatgggag
gaacttgagggcttagacctcccaccagagcttgacactcctaaggcctctgctaacgca
cgttcatcagtcttcgtgacacctactcaaggtatgcccgtaagtcatatttggagccag
aaatcatcccttgctgctgagcaagctgcagcgggaagcttcgacactgcaatgcgtctg
ctcaacagacagcttggtataaagaactttgcacctttgaaatccatgtttattgatttg
ttcagtggcagccatagctacctgcgtgctttttcgtcatcgcctgtggtttcacttgcc
attgagcgcggatggagcgagtcttccagtcccaacgtccgtggcccaccatctcttgtt
tatgatttctctcagcaagaagagaagctcaaatccggttataaagccacaacaagtggg
aaattgactgaggctctcaggctcttcctctctatcctccacaccatccctctagtggtg
gtcgagtcaagaagcgaagtcgatgaagtaaaggagctggtcaccatcgttaaagaatat
gtcctcggtctgaaaatggagcttaagagaagggagactaaagatgatccagtgaggcag
caggagctcgctgcttacttcactcactgcaacctccaactacctcacttacgactcgcg
ctgtttagtgcaatgggcgtctgctacaagtcaaagaacctcgccactgcctataccttc
gccaaaagattgctggaaaccaacccaatggagagccaagccaagacggctagacaaatt
gttcaagccgctgaacgcaatatgactgatacaaccgagctcaactacgatttcagaaac
ccgttcgtgatatgtgggtcaacctatgtccccatctacagaggtcagaaagacgtgtct
tgtccatactgcactgctaggtttgtaccaagccaagccggaaacatatgcggtgtctgt
gatcttgcagtcattggcgcagacgcatctggtctggtgtgctctccgtctcaagttcgg
tga
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