KEGG   Raphanus sativus (radish): 108839904
Entry
108839904         CDS       T06014                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108839904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108839904
   03036 Chromosome and associated proteins [BR:rsz03036]
    108839904
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     108839904
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     108839904
    COMPASS/SET1 complex (yeast)
     108839904
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st PAC11 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_NUP159_NUP214 WD40_RFWD3 DSE1_N Beta-prop_NOL10_N Beta-prop_ACSF4 NBCH_WD40 Tricorn_2nd Beta-prop_Nup120_160 TRM82_WD PD40 MIOS_WD40 Beta-prop_NWD2_C WD_LRWD1 CFAP251_N
Other DBs
NCBI-GeneID: 108839904
NCBI-ProteinID: XP_056858876
UniProt: A0A9W3D557
LinkDB
Position
2:complement(27842274..27845955)
AA seq 332 aa
MSLTELDDGLVRRMAIGAVFSDFGGKIRSLGFHRTDDLLVTSSEDDSLRLFDIANAKQVK
ITYHKKHGTDRVCFTHHPSSLICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSL
CMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKL
FDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSL
EASQGTSIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAM
FVAASSVLTFWIPNDGEAPAPADPPADQQTPQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgtcgttgacggagctagacgacggactggtacgcaggatggccatcggagcagtcttc
tctgatttcggagggaagatacgttcgttaggtttccataggactgatgatctactagta
acatcgagcgaggatgattcactacgcctcttcgatatcgccaacgctaaacaggtgaag
ataacataccataagaaacatggtaccgatcgtgtatgctttactcatcatcccagctct
cttatctgctcttctctttacaatcttgagtccactggagaatctttgagatatctctca
atgtacgacaatcggattcttcgttactttaaagggcacaaagacagggttgtatccctt
tgtatgtctcctattaatgatagcttcatgtctggttctctcgaccgaagtgtccgactc
tgggatcttcgtgttaatgcctgccagggaattctacacctacgtgggagacctgcagta
gcttatgaccaacaaggcctggtctttgcaattgcaatggaaggaggtgctgttaaattg
tttgattccagatgttatgacaagggtccctttgatacgtttctggtgggtggtgatact
gctgaggtcaatgatataaaattcagcaacgatggaaaatctatgcttcttactaccaca
aataacaatatctatgttcttgatgcttatcatggagagaagaaatgcggttttagtttg
gaggcttcacagggtacatccattgaagccaccttcacaccagatggcaagtatgttctg
tcaggttcaggagatggaaccttacatgcgtggaacatcgagaacccatctgaggtggcg
aggtgggagaacaacataggagtagtgtcgtgtctgaaatgggcaccgcgtagagcaatg
ttcgttgctgcctcctcggttctcactttttggatccccaacgacggtgaggcaccagcc
cccgctgatcctcctgccgaccaacaaactcctcagtga

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