Raphanus sativus (radish): 108840239
Help
Entry
108840239 CDS
T06014
Name
(RefSeq) transcription factor SPEECHLESS isoform X1
KO
K20558
transcription factor SPEECHLESS
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108840239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108840239
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108840239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
CDC45
Ribosomal_L19e
TrAA12
Motif
Other DBs
NCBI-GeneID:
108840239
NCBI-ProteinID:
XP_018468579
UniProt:
A0A6J0M941
LinkDB
All DBs
Position
2:24086571..24089677
Genome browser
AA seq
369 aa
AA seq
DB search
MQEIISDFLEECEFVDTSLAGDDLFAILESLEGAGEISSTVASTPRDGIASSKELVKDQI
HETSSPKRNKRKRIETDKEEEEEEDGEGEGEGEGEGEEDNKQDGEQKMSHVTVERNRRKQ
MNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRL
VPSPRPSPPVLSPRKPPLSPRINHLQIHHHLLPPISPRTPQPTSPYRAHPPQLPLIPQPP
LRSYSSLASCSTLGDPPPYSPASSSSSPSVSSNHESSVINELVANSKSALADVEVKFSGA
NVLLKTASHKIPGQVMKIIAALEDLALEILQVNINSVDETMLNSFTIKIGIECQLSAEEL
AQQVQQTFC
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagataatatcggattttcttgaagagtgtgaattcgtcgacacttcactagcc
ggtgatgatctatttgctatcttagagagtcttgaaggcgccggagagatatcctccacg
gtggcatctacacctagagatggaattgcaagttcaaaagagttagtaaaggatcaaatc
catgaaacttcatctcctaagaggaataaaaggaaaagaatagaaactgacaaagaggag
gaggaagaagaagacggagaaggagaaggagaaggagaaggggaaggggaggaagataat
aagcaagatggggaacaaaagatgtctcatgtaaccgtggaacgtaacaggagaaagcaa
atgaatgagcacttgacggttctacgttctcttatgccttgtttctacgtcaaacggggg
gaccaagcatcgattataggaggagttgtggaatacataagcgagctacaacaagtcctt
caatctttagaagccaagaaacaacgtaagacctacgcggaagtgctaagcccgagacta
gtcccgagccctcgtccttcgccgcctgtcctaagcccgcgaaaaccgcctcttagtccg
cgcatcaaccaccttcagatccaccaccacctcctccctcccataagccctcgaacccct
cagcccacaagcccataccgagcccatccgccgcaactaccactcatcccacagcctcct
cttcgttcttacagctcattggcaagttgcagcactttaggggacccacctccatactct
ccagcttcatcttcttcctcaccttcagttagtagtaaccatgagagtagtgtgataaat
gagctcgttgctaactcaaagtcggctttggctgacgtggaagtgaagttctcaggagct
aatgtgctgcttaaaacggcatcgcataagatccctggacaggttatgaagataatagct
gctcttgaggatttggctctcgagattcttcaggttaatatcaactcggtcgacgaaacc
atgcttaattctttcaccatcaagattggaattgagtgccaactaagtgcagaagaattg
gctcaacaagttcagcaaacattctgctaa
DBGET
integrated database retrieval system
