Raphanus sativus (radish): 108840347
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Entry
108840347 CDS
T06014
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108840347
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108840347
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108840347
NCBI-ProteinID:
XP_018468681
UniProt:
A0A6J0MAW1
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Position
2:complement(22844256..22845966)
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AA seq
387 aa
AA seq
DB search
MSIVCTIFLFLLTTSSAFASAFPKPPTASQWSTSETSNSTASCSATGNPIDDCWRCDQKW
NSNRKSLADCAVGFGRDSIGGRAGEFYTVTDSGDEDPLNPSPGTLRYAATQDQPLWIIFD
RDMVITLKEDIQVTSYKTIDGRGNNVQIAYGPCLALYQVSNVIIHNIYIHHCVPAKRSLG
GYSDGDGISIFESRDVWIDHCTLEKCHDGLIDAVSGSTDITISNNYMLNHNEVMLLGHSD
EFDGDRDMRVSIAFNYFGEGLVQRMPRCRHGYFHIVNNIYREWEMYAIGGSANPTIFSQG
NVFIASDNQFTKEVTKRESIDGDDEWKEWNWKSEGDEMLNGAFFTPSGNEDSPSYTKMSS
MVARPASLLKTTHPSVGVLSCQIGKPC
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtctattgtatgtacaattttcttgtttctcttaacaacttcttccgcgtttgcgtct
gcgtttcctaaaccaccaaccgcaagtcaatggtctacatcagagacatcaaactcaaca
gcttcttgctcagccactggaaatccaatcgacgactgctggagatgcgaccagaagtgg
aactccaaccgcaaaagcctcgcggactgcgcggttggattcggacgcgactcaataggc
ggtagagccggggagttctacaccgtaacagattcaggagacgaggatcctctaaaccca
tctccaggtacattacgttacgccgcaacacaagaccaacctctatggatcatattcgat
agagacatggtaataacactaaaagaagacattcaagtgacctcatacaaaaccatagac
ggcagaggaaataacgtgcagatagcttatggaccgtgtttagctttgtatcaagtaagt
aacgtaatcatacacaatatttatatccaccattgcgttccggcgaaacggtccttggga
gggtattctgatggagatgggatctcgatattcgagtcacgagatgtttggattgatcat
tgtacgttagagaagtgtcacgatgggcttatcgatgcggtgagtgggtcgacggatata
acgatttcgaataactacatgttgaatcataatgaagtcatgcttttgggtcacagtgat
gagtttgacggtgatcgagacatgagggtttcgatcgcgtttaattattttggtgaagga
cttgtccagcgaatgcccaggtgcaggcatggatattttcacattgtgaataatatttat
agagagtgggagatgtatgcaattggtggaagtgctaatccaaccatttttagtcaaggg
aatgtgtttatagcttcggataatcagttcacaaaggaggtgacaaagcgagagagtata
gatggagacgatgaatggaaggaatggaattggaaatcagaaggagatgaaatgctaaac
ggtgctttctttacaccatcagggaacgaagattctcctagctataccaaaatgtctagt
atggtagctcgaccagcttcacttctcaagaccacacatccatcagtaggtgttcttagt
tgccaaattggcaaaccttgttag
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