Raphanus sativus (radish): 108841764
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Entry
108841764 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108841764
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108841764
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108841764
04121 Ubiquitin system [BR:
rsz04121
]
108841764
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108841764
Peptidases and inhibitors [BR:
rsz01002
]
Metallo peptidases
Family M67
108841764
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Others
Others
108841764
Ubiquitin system [BR:
rsz04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
108841764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_dimer
JAB
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
108841764
NCBI-ProteinID:
XP_018470028
UniProt:
A0A6J0MDG6
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Position
2:complement(29610726..29614349)
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AA seq
419 aa
AA seq
DB search
MKIDLNKVARKIEVDNRIPLRNYYRIADNLLRQASIYREEKNVVDLYIMLLRYSSLISET
VPFHQDYQASLPQARLGSRKKLRAVINELESLKPEFDRRVDELNREDDESYRVGSDFPVV
SYSSDAVEWPPVHRDPYSRPDIKKTSQPSATYNNNLTLSSYRTPIDQQFQKLSFDFLPAN
QATLSRHSFLGPNGLKSQWVAPKSEIKVQYPSNTEWGSAENSALIDAGPSSSSTSLNGDS
QGVSTLNSVLSLDDGRWQRHSEAVTSQFVSDVTEDPFQFVGMKQPTPPPVLAQVHQEFAQ
ICPSKVADPRPGPALPSLEEKEGSNAYQHLHVPVRIMEDFLRLARSNTERNLETCGVLAG
SLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFSSGQTLSISLGLDSYTPYTNLLHVIS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgatctgaacaaggtggctcgtaagatcgaggtggataaccgtatccctctc
cgtaactactaccgcatcgccgataaccttctccgtcaggccagcatataccgggaagag
aagaatgttgttgatttgtatatcatgcttcttagatattcaagtttgatttctgaaacc
gttcctttccatcaagattaccaggcatcgcttccacaagcaagacttgggagtaggaag
aagttgcgtgctgtaatcaatgagctcgagtctttgaaaccggaatttgaccggcgagtt
gatgagctgaaccgagaagatgatgaatcttatcgggttgggagtgatttccctgtcgta
tcatatagttcagatgctgttgaatggcctcctgttcacagagatccatactcaagacct
gatattaagaagacatctcaaccatccgccacgtataacaataatctgaccttatcttca
tatcgtacaccaattgatcagcaattccagaagttatcttttgattttcttcctgcaaac
caagcaaccttgtctagacattcatttctaggtccaaacggtcttaaaagtcagtgggtt
gcacccaagtcggagataaaggttcaatatccgagtaataccgaatggggttctgctgaa
aattcagctttgattgacgctggacctagcagttcctcaacatcactaaatggtgattct
caaggggtctcaacgttgaactctgtactgtccttagatgatggtcgatggcagcgtcat
tctgaggcggttacttcccagtttgtcagtgacgtaactgaagacccgtttcagtttgtg
ggtatgaagcaacctacccctcctcctgtgcttgcccaagtgcatcaagagtttgcccaa
atctgcccatctaaagtagctgatcctagaccaggacctgcacttccttccttagaagaa
aaagaaggcagcaatgcttatcagcatttgcatgtgcctgtgcggataatggaagatttc
ttaaggctagctcggtcaaacacagaaaggaatctagaaacttgtggagtgcttgctggc
tctctgaaaaacagggtttttcatatcacaactctcataatcccaaagcaggagtctacc
tcagattcttgccaaacactaaacgaagaagaaatatttagttcaggacagactctctct
atttcccttgggttggattcatacacaccctacacaaacttgcttcatgtcatcagttga
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