Raphanus sativus (radish): 108841796
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Entry
108841796 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108841796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108841796
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108841796
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
HECT type E3
108841796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
DUF4865
Motif
Other DBs
NCBI-GeneID:
108841796
NCBI-ProteinID:
XP_018470055
UniProt:
A0A6J0MC01
LinkDB
All DBs
Position
2:25041622..25048697
Genome browser
AA seq
1499 aa
AA seq
DB search
MENRGQKRMEVVEEPPADKRACNSQDFRPSTSGGSSVQAQANGAAASGHGGNGDADMDTS
SSASPSSRSDREEEDSEDYGSCDDSDDADPRRRVLQQYQRGRSSGDQMKLKSLMSRLSEE
NDPSLQLTGLTELCEVLSFCTEDSLSSVMADILSRVLVKLAKDESNGDIMLLAIRAITYL
CDVYPRSVAFLVKHEAIPALCQRLLAIEYLDVAEQCLQALEKISRDQPVACLNAGAIMAV
LSYIDFFSTSIQRVAVSTVVNICRKLPPEPPSPVMDAVPVLCNLLQYEDRQLVESVAICL
TKIADQVSQSPAMLDQLCSHGLIHQSTHLLNLNSRTTLSQPVYNGVIGLLRKLSSGSTLA
FRTLYELNIGYRLKEIISTYDISHSVSSTQPINACSNQVHEVLKLVIELLPASPVEGNSL
ALEKESFLVDQPNLLQQFGADVLPVLIQVLKSGASVYVSYGCLSAIYKLTCLSKSDDFVE
LLNNANISSVLAGILSRKDHHVVVVALQIAEVLLDKYRDAFLNSFIKEGVFFAIAAFLNS
DRGQQNPVSDIIQGSVPKEIVKCLCQAFEGSVSSSSQTCKVGNDSVYILATRIKESFFGP
EVFDSQKGLTDVLQNLKNLSVELNDLMTVPIDARVLHGEKFISIWNQIMERLNGRESVST
FEFIESGVVKALASYLSNGLYERKLGKGDPECDSLPLVGNRFEVFTRLLWSDGEATSSVL
IQKLQNSLSSLESYPVVLSQFLKQKNTFAAVPSRRCISYPVLRVRFAKAEGETCLRDYCQ
DFVTVDPLCYLGAVEQYMLSKVNLETLNSVKAKDQAIECQSSQLQSTSIACQGESSSHME
IDSPNASQLQGSQEEEDQDRLTDPGEEKSSSSNGEDVRPRLLFRLEGLELDSSLTVYQAI
LLHKLKSSNETTNDSKLSGHHTITYERVPQLAESHENLFPLGSMDNDEYHPFLSYLFAHQ
LGLRHKGTSPPAYAILFLLKSLEGMNRFLFHLISHERINAFGEGRLESLDDLRVQVRPVP
YAEFVSSKLTEKLEQQLRDSFAVSTCGLPPWFNELMDSCPFLFSFEVKSKYFRLAAFGSQ
QQVHNQPQHLSSSNVHGEGRSVTGSLPRKKFLACRDKILESAAKMMELHGTQKVAIEVEY
SEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRSDRSSLAGKPMEDPGSLVPPSGLFPRPWS
AASAAFPGVLQKFVLLGTVVAKALQDGRVLDIPFSKTFYKLILGQELSSFDIHFVDPELC
KTLVELQALARRKKVISESQSDVRAAKCDLSFRGTKIEDLCLDFSLPGYRGYVLAPQFAS
DMVNLDNLEEYVKAIVNATVCNGIQKQVEAFRSGFNKVFPIEYLKIFNEEELETLLCGER
DLFNMNEVLDHIKFDHGYTSSSPPVENLLEILHEFDKEKQRAFLQFVTGCPRLPPGGLAS
LNPKLTIVRKHGSDSSETDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaggacagaaacggatggaggttgtggaggagccaccagctgataagaga
gcttgcaactcgcaggacttcaggccaagcacatctggcggctcctctgttcaggctcaa
gccaatggcgctgcggcttcaggacatggaggaaatggggatgctgacatggatacttct
tcctctgcttctccttcgagtcgttcagacagggaggaggaggactccgaggactatgga
tcctgcgatgattctgacgatgcagatccgaggaggagggtgcttcagcagtatcagagg
ggaagatcatctggggatcagatgaaactgaagtctctcatgtcgagattgagtgaggaa
aacgatccttctttgcagttaactggtcttacggagttgtgtgaagtgttgtctttctgt
acggaagactctctgtcgagcgtaatggctgatatcctctctcgggtgcttgttaagttg
gctaaggatgagagcaatggtgatatcatgctgctcgcaatcagagcgattacttacttg
tgtgatgtttatccgcggtctgtagcgttccttgtaaaacatgaggctattcctgctctc
tgccaaagactactggcgattgagtatctggacgttgctgagcagtgtctgcaagcactt
gagaaaatatcccgagatcagccagtagcatgcttgaatgctggagcaattatggcagtg
ctttcttatattgatttcttctcaacaagcatacagagggtcgcagtttctactgtggtg
aatatatgtaggaagcttccacctgagcctccctcgcctgtcatggatgctgttccggta
ttatgcaatcttcttcaatatgaagacagacagttggtcgagagtgtcgctatttgctta
acaaaaatcgcagatcaagttagccagtcacctgcaatgttggatcaactatgtagccat
ggactaatccaccagtccacacatcttttaaacttgaacagccgcaccaccctatctcaa
cctgtttacaacggcgtgattggattgctaagaaaactatcttctggttcaactttagct
ttcaggacattgtatgagcttaacattggctacagactaaaagaaattatatccacctat
gacatttctcattcagtgtcgtctacacagcccatcaatgcatgttccaaccaggtgcat
gaagtcttgaagctggtaattgagcttcttccagcttcacctgtagagggcaattcgctg
gcattagaaaaggaaagttttcttgtcgatcagcctaatctcttgcaacaatttggagca
gacgtgcttcctgttctgattcaggtactaaaatctggagctagcgtgtatgtttcttat
ggttgcttatcagcaatttacaagctgacttgcttaagtaagtcagacgattttgtcgag
ttactgaacaatgctaacatttcaagtgttttggcgggcattttgtcaaggaaagatcat
catgtggtcgttgttgcactgcagattgctgaagtacttcttgacaaatacagagatgct
tttttgaattccttcataaaggagggtgttttttttgcaattgcagcattcctaaattct
gacagggggcaacagaatccagtatctgatatcattcaaggatctgttccaaaagagatt
gtgaaatgcttgtgccaggcttttgaaggatcggtttcctcttcttcacaaacctgcaag
gttggaaatgattctgtctacattctcgcaacacgtatcaaggagagtttctttggacct
gaggtattcgactctcagaaaggcttgacggatgtcctccagaacctcaagaacctgtcg
gttgaacttaacgatttgatgactgtacctatcgatgctcgtgtcctgcacggtgagaag
ttcatctcaatatggaatcagataatggaaaggctgaatggaagggaatctgtgtccact
tttgaatttatagagagtggagttgtaaaggcactggcaagttatctgtctaatggactc
tacgaaaggaaacttggcaaaggtgatcctgaatgtgatagtttaccacttgttggtaac
agatttgaagttttcacaagattactatggtctgatggcgaggcaacttcatccgtgtta
atacagaagctccaaaattctttatcttctttagaaagctacccagttgtcctaagccag
tttttgaagcaaaagaacacattcgcggctgttccgagtagacgttgcataagttatcca
gtcctaagagttcgttttgctaaagcagagggggagacttgtctgcgtgattactgccaa
gattttgtcaccgttgacccactttgctacttgggtgctgtcgagcaatacatgttgtct
aaagtgaatttggaaactttaaattccgtcaaagcaaaagatcaggctatagaatgtcaa
tcttcccaactgcagtcaacttcgatagcttgtcaaggtgaaagctcaagccatatggag
attgacagtcctaatgcttctcagttgcagggatctcaagaggaggaagaccaagatcgc
cttacagatccaggagaagaaaagtcttcctcatctaatggagaggatgtgcgacctcga
cttttgtttcggctggaaggacttgaactagactcgtctttgactgtttaccaggcaatt
ctcttgcacaaactaaaatcatcaaatgagactaccaacgattcaaagctgagtggacac
cacaccatcacttatgaaagggttccacagcttgcagagtctcatgaaaatctgtttcct
ctcggatctatggacaatgacgagtatcacccgtttttatcctacttgtttgcccatcaa
cttggtttgcgccacaaagggacaagtcctcctgcgtatgccatattgtttctgcttaag
agtctggagggcatgaacagatttctctttcacctgatttctcatgaaaggattaatgct
tttggggaaggtaggctggagagtttggatgatctaagggtgcaggttcgtccggtgcca
tatgctgaatttgttagctctaagcttacagagaagttagagcagcagctgcgtgactcc
tttgctgtgtcaacctgcggtctaccaccgtggtttaatgagctaatggattcatgcccc
tttctgtttagtttcgaagtcaaatctaaatacttccgacttgcagcatttggttcacag
cagcaagtccataatcagccacagcaccttagtagttcaaatgttcatggtgaagggcgc
tcagtaacgggtagtttacctcgtaaaaagtttttagcttgccgtgacaagattctagag
tccgctgcaaaaatgatggagttacacggcacccagaaggtggccattgaggttgagtac
agtgaagaagtcggaactggccttgggccgacgctggagttctacacacttgtcagtaga
gcatttcaaaatcccgatcttggtatgtggagaagtgatcgtagttccttggctggaaaa
ccaatggaagacccgggaagtttggtgcctccttcaggactctttccacgcccttggtca
gccgcatcagctgcttttccaggtgtgctgcagaaatttgtcctcttagggacagtagta
gccaaggctctacaagatggacgagtgttagacattcctttctccaaaaccttctataaa
ctaattctcggacaggagttgagttcatttgacatccacttcgttgaccctgaactttgt
aaaacactggtggaattgcaagctcttgcacgtaggaaaaaggttatctcagaatcacaa
agtgatgtccgagcagccaagtgtgatttaagtttccgtggaacaaagattgaggacctt
tgccttgacttttccctgcctgggtacaggggctatgttctcgctccccagtttgctagt
gatatggtaaatttggataacctcgaggagtatgtaaaggctattgtcaatgcaacagta
tgtaacgggatccaaaaacaagtggaagcgtttcggtctggatttaacaaagttttccct
attgaatatcttaagatattcaatgaagaagaactggaaactttattgtgtggagaacga
gatctctttaatatgaatgaagtcttggatcacatcaagtttgatcatggttatacttct
agcagcccgccagttgaaaatttgttggagattctgcatgagtttgacaaggagaaacag
cgagcttttctgcaatttgtaacaggatgtcctcggctaccccctggcggtttggcgtct
ctcaatcccaaacttacaattgtccgcaagcacggtagcgactcatcagaaaccgacctg
cctagtgtgatgacatgcgccaattatctgaaacttccaccttactcttccaaagaaaag
atgaaggagaagctaatctatgcaataactgaaggacaaggttccttccacctctcttga
DBGET
integrated database retrieval system
