Raphanus sativus (radish): 108841801
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Entry
108841801 CDS
T06014
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108841801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108841801
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108841801
Complex C
U5 SnRNP specific factors
108841801
BRITE hierarchy
SSDB
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Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108841801
NCBI-ProteinID:
XP_056859066
UniProt:
A0A9W3D5P9
LinkDB
All DBs
Position
2:complement(31484202..31493910)
Genome browser
AA seq
2360 aa
AA seq
DB search
MWNSNDGMPLAPPGTGGSMIPPPHPSYTALPPHPSNPTPPPVEPTPEEAEAKLEEKARKW
MQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFSHDKRVYLGALKFVPH
AVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKTK
LINGPSYRRWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGPK
FEPLYRDMEKGEEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMVM
YIKTEDPDLPAFYYDPLLHPISNTNKERRERNVYEDDEEDDFTLPEGVEPLLKDTHLYTD
TTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVL
NELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKSLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLAD
GLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRV
WLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDA
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHY
NRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVHW
LESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHE
ALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLF
PNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRL
LRLVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGLT
RASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTE
HPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVS
VYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDE
HMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKI
QTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRS
GMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRG
IPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ
VLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDVFDQK
ASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAF
GNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQ
IIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
CLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLK
PDKSIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAE
ITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNIHGDELISTTISPYEQAAFGSKTDWRV
RAISSTNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRSQIAGYLYGISPPD
NPQVKEIRCVVMVPQLGNHQQVNLPLALPEHDFLNNLEPLGWLHTQPNELPQLSPQDVTA
HSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQAGYEWGRLNKDTGSNPHGYLPTH
YEKVQMLLSDRFLGFYMVPENGSWNYNFMGVKHTVGMKYSVKLGTPKEFYHEEHRPTHFL
EFSNMEEADFAEGDREDTFA
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcaacgacggtatgccgttagcccctcccggcaccggaggctcgatgatt
ccgccaccgcatccttcatacaccgcgcttccgccgcatccttctaatccgactcctcct
ccggtcgagcctactcccgaagaagctgaggcgaagctcgaggagaaggcgcgcaaatgg
atgcagctgaactcgaagcgctacggcgacaagaggaagttcggattcgtggaaactcag
aaggaggacatgccgcctgagcacgtcaggaagattatcagggatcatggtgatatgtca
tcgaagaagtttagtcacgataaacgtgtgtaccttggagctcttaagttcgtccctcac
gccgtcttcaagctcctggagaatatgcctatgccctgggagcaggttcgagatgttaag
gttctgtaccacatcaccggtgctattacattcgtgaacgagattccatgggttgtggaa
cctatttacatggctcagtggggcactatgtggattatgatgcgaagggagaagagggat
cgtcgtcatttcaagaggatgcggtttccaccgtttgatgatgaggagcctccactggac
tacgcagacaacttgttggacgttgatcctctcgagccaattcagttggagcttgacgag
gaagaagattctgctgtacacacttggttttatgaccacaagccactagtaaagaccaag
ctgattaatggtcccagttaccggaggtggaatctctctcttccgattatggctaccctt
cacaggctggcaggccagctgttgtctgatttgatcgatcgcaactacttctacttgttt
gacatgccgtctttcttcaccgccaaggctcttaacatgtgtatacctggtggtcctaag
tttgaacctttgtaccgtgatatggagaaaggggaagaggactggaatgagttcaacgac
atcaacaagcttatcattcgttcccctcttcgaactgagtatagaatagcctttcctcac
ctgtacaacaatcgtcccaggaaagtcaaactctgtgtgtatcacagtcctatggtgatg
tatataaagaccgaggatcctgatcttcctgcgttttattatgatccgttgcttcacccg
ataagcaacaccaataaggagaggcgtgaaaggaacgtttatgaagatgatgaagaggac
gactttaccttaccagagggagtggaacctttgctaaaagacacccacctctacactgac
actacagctgctggcatttcattgctgtttgccccacgacctttcaatatgaggtctggg
agaacaaggcgatcagaagatattcccttggtgtcagagtggttcaaggagcactgtcct
ccagcttatccggttaaagttcgagttagttaccaaaagcttctgaagtgctatgttctg
aatgagttgcaccatagaccacctaaagcccagaagaagaagcacttattccgctctctt
gcagctacaaagtttttccagagtactgagttggattgggttgaagtaggtctgcaagtc
tgcaggcaggggtataatatgctgaacctgctgatccacaggaagagtttgaactacctg
caccttgactacaacttcaacctgaagcctgttaaaacattgaccaccaaagagcgaaag
aagtcacgttttgggaacgctttccatctctgccgtgagatcctccggctgacaaagctt
gtcgtagatgcaaatgttcagttcagacttggaaatgttgatgctttccaactggctgac
ggtctgcagtatattttctcccatgttggccagttgaccggtatgtatcgttacaaatac
agactgatgaggcagattaggatgtgcaaggatttgaagcacttgatatattaccgtttc
aataccggtcctgtgggtaagggaccagggtgtggattttgggccccaatgtggagggta
tggttgtttttccttcgtggaatagttcctcttcttgaacgatggctagggaatcttctt
gctcgtcagtttgaggggcgtcattcaaaaggagttgccaaaactgtcacgaaacagaga
gttgagagccacttcgatttggaactgcgagctgctgtcatgcatgacgtccttgatgcc
atgccagagggtatcaagcaaaacaaagctcgaacaatattacagcaccttagcgaggca
tggcgatgttggaaagctaatatcccttggaaggtccctgggttacccgtgccaattgag
aatatgatcctgcgttatgtcaaatctaaggctgattggtggacaaatgttgctcactac
aatcgtgagcgtatcagaagaggggctacggttgataagactgtttgcagaaagaatctt
ggaaggttgactcgtctttggctaaaggctgaacaggaacggcagcacaattacctgaaa
gacggtccatatgtcactccggaggaagcactcgcaatttatacaactactgtccattgg
ctggaatcgaggaaattttctccaattccattccctccattgtcttacaaacatgacaca
aagttgcttatcctggcccttgagagactgaaggaatcatacagtgttgctgtgaggttg
aatcagcagcagcgagaggagcttggtctgattgaacaagcgtatgacaatcctcatgag
gctctgtcacgaattaaacgtcatcttctcactcagcgtggcttcaaagaggttggcata
gagtttatggatctatacagctacttgattccagtttatgagatagagcctctggagaaa
attactgatgcctatcttgaccaatacttgtggtacgagggtgataagcgccacttgttc
ccaaactggatcaagccagcagactcagagccgccaccacttctggtatacaagtggtgt
caaggtatcaataatttacaaggcatatgggacacaggggatgggcaatgtgttgtgatg
ctccagactaagtttgaaaaattctttgagaagatcgacttaacaatgttgaacaggctg
cttcgtttggttcttgaccacaatattgcggattatgtgtctgccaagaataatgtggtt
ctgtcttataaagatatgagtcatactaactcgtatggtctgattaggggacttcagttt
gcatcttttgttgttcaattttatggactactgcttgatctgctgcttcttggtttaact
cgggcgagtgaaattgctgggccaccacagatgcctaacgagtttatgactttttgggat
acaaaagtggagacacgtcatcccataagactatattctcggtatatagacaaagttcat
ataatgttcaaatttacccatgaagaagcaagggatcttattcagcgctatcttactgag
catcctgatcccaacaatgaaaacatggtgggatacaacaataagaagtgctggccaaga
gatgcaaggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttctgggac
atgaagaatcgtcttcctcggagcataacaactttggagtgggagaatggctttgtctct
gtctacagcaaggataatcccaacctgctcttcagcatgtgtggatttgaagttcgcata
cttccaaaaatcaggatgactcaggaagctttcagcaacacaagagatggtgtctggaat
ctgcaaaatgagcagaccaaggagaggactgccgttgcttttctgcgggttgatgatgaa
cacatgaaggtgtttgagaatcgtgtcaggcagatccttatgtcttcaggatcaaccacc
ttcaccaaaattgtcaataaatggaatacagctctaattggtctcatgacctacttccgt
gaagccactgtgcatactcaagagctcttggatctactcgtgaagtgcgaaaacaaaatt
caaacaaggattaagatagggctgaactcgaagatgcctagtcggtttcctcccgttatc
ttctacactccgaaagaaattggtgggctgggaatgttgtcaatgggtcatattttgatt
ccacaaagtgaccttcggtacagcaagcagacagatgtaggggtaacccactttaggagt
ggaatgagccatgaggaagatcagcttataccaaatctgtatcgttacatacagccatgg
gaaagtgagtttattgattcacagcgggtgtgggcagagtatgctttaaagaggcaggaa
gcacaggctcaaaataggcgtcttacgttggaggatttggaggactcttgggatagggga
attcctcgaataaacacactctttcagaaggataggcacacgttagcgtatgataaaggt
tggagggttcggaccgactttaagcagtaccaagtcctcaaacaaaatcctttctggtgg
acgcaccagaggcatgatgggaagctgtggaatttaaacaattaccgaactgatgttatc
caagctcttggaggtgttgagggtatccttgagcacactttattcaaggggacatacttc
ccaacatgggagggtcttttctgggagaaggcatctgggtttgaggagtcgatgaaatat
aagaagctgacgaatgcacagaggtctggtctgaaccagattccaaacagaagattcacg
ctttggtggtcgccaacaataaatcgagcgaatgtttatgtgggtttccaagtgcagttg
gatctgacaggaatttttatgcatggaaagattcctacactgaagatatctctgattcag
attttccgtgcccatttgtggcaaaagatccatgagagtgttgttatggatctttgtcaa
gtattggaccaagagttggatgctttggagattgaaactgttcagaaggagacaattcat
ccaaggaagagttataagatgaacagctcctgcgctgatgttcttctgtttgctgcccat
aaatggccaatgtcaaaaccaagcctggttgctgagtcaaaggatgtgttcgaccagaaa
gctagcaacaagtattggatagatgtgcaacttcggtggggagattatgattcccatgat
attgagcgttatactagggccaaattcatggattatacaactgataacatgtcaatctat
ccatctccaacaggtgtaatgattgggcttgatctggcatacaatttgcattctgcattt
ggcaattggttcccaggttctaaacctcttcttgctcaagcaatgaacaagatcatgaag
tctaatccagctctgtacgtgttgagagagaggataaggaaaggtttgcagttgtactca
tctgagcctacagagccttatttgtcatcgcaaaactatggtgaaatattcagcaatcaa
attatatggtttgtcgatgataccaatgtctatcgtgttacaattcacaagacatttgaa
ggaaatttaacaacaaagcctatcaatggtgcgatctttatttttaatccaagaactggg
cagctattcctgaaggttatccatacaagcgtttgggctggtcagaagcgtcttggtcag
ctagcgaaatggaagactgctgaagaggtggctgcccttgtgcggtctctccctgttgaa
gaacagccaaaacaagttattgttactcgcaaaggaatgctcgatccccttgaggtccac
ttactggatttccccaacattgttatcaagggaagtgaactgcagcttccattccaggcg
tgccttaagatagagaaatttggtgatctgattttgaaggccacagaaccacagatggtc
ctattcaatatctatgatgattggttgaagagtatctcttcgtatactgccttttcaaga
ctcattctgatccttcgtgcgcttcacgtgaataatgagaaggctaagatgctgctgaag
cccgacaagtctattgtcactgagccgcatcacatctggccctctctcactgacgaccag
tggatgaaggtggaggtagctcttagggatcttatcctatctgactatgcaaagaagaac
aatgtgaatacctcagctctgacacaatcagagatcagagatattatccttggagctgag
attaccccaccctctcaacagaggcaacagatagctgagatcgagaaacaggcaaaagaa
gccagccagcttactgcagtcacaaccagaacgacaaatattcatggtgatgagctcatt
agcactaccattagcccctacgagcaagctgcattcggttccaagacagattggcgtgtg
cgtgcaatatcatctacgaacctctacctcagagtcaatcatatctacgtgaactctgat
gacataaaggagaccggatacacatacatcatgccaaagaacatcctgaagaagttcata
tgcgtagcagatcttcgtagtcaaattgctggatatctatatggtataagcccccctgat
aatccccaggtgaaggaaatccgttgtgttgtgatggtgccacagctgggaaatcaccag
caagttaacctgccgttagctcttcctgagcatgatttcttaaataatctcgagccattg
ggatggctgcacacacagcctaacgagctccctcaattgtcaccacaggatgtgactgct
cattcccgcattctggagaacaacaagcaatgggatggagaaaaatgcatcatcctgaca
tgcagtttcactccggggtcctgctctttgacatcatataagctgacccaagccgggtat
gaatggggacgtctcaacaaggacacaggcagcaatcctcatggctaccttcccacccat
tatgagaaggttcaaatgctattgagtgaccgattcctcgggttttacatggttcctgag
aacggatcgtggaactacaactttatgggagtgaagcacacggtgggcatgaaatatagc
gtcaaacttggaaccccaaaggagttctatcacgaggaacatcgacccactcatttcctg
gagttcagcaacatggaggaggctgacttcgctgagggagatcgtgaagacacctttgct
tga
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