Raphanus sativus (radish): 108841852
Help
Entry
108841852 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108841852
09122 Translation
03013 Nucleocytoplasmic transport
108841852
03015 mRNA surveillance pathway
108841852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108841852
03041 Spliceosome [BR:
rsz03041
]
108841852
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108841852
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108841852
Spliceosome [BR:
rsz03041
]
Complex C
Other components
EJC/TREX
108841852
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108841852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108841852
NCBI-ProteinID:
XP_018470134
UniProt:
A0A6J0MDT0
LinkDB
All DBs
Position
2:complement(26991189..26994744)
Genome browser
AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQARFEVDIKQLPENID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagggacaacgaagcttatgaggaggagctcctagactacgaggaagag
gacgagaaggtcttagattctgggaataaagttaacggcgatgccgtgaagaaaggttac
gtgggaatacacagttcaggattcagagacttccttttgaagccggagcttctccgagct
attgtagactctggttttgagcatccatccgaagtgcaacacgaatgtatccctcaagcc
atcttgggcatggatgttatctgccaagctaaatctggtatggggaagactgctgtgttt
gtcctttcgactctgcaacagatcgagccaactcctggccaggtgtctgcacttatcttg
tgtcacactagagagttagcttaccagatctgcaatgagttcgtgcgattcagtacctat
ctgcctgatactaaggtttcagtgttctacggaggagtcaacaataaaattcacaaagaa
ttgcttaagaatgaatgtcctcacattgttgttggaacacctggtcgtgtgcttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctggagtctctcgacatgcggagggatgtgcaggaaattttcaagatgactcct
cacgacaaacaagttatgatgttctcagcaacgctcagcaaggagattcgcccagtctgc
aagaagtttatgcaagatccaatggaaatatatgttgatgatgaagccaaattgactctt
catgggcttgtccagcactacatcaaactgagcgagatggagaaaaaccgcaagttgaat
gaccttcttgacgcattggacttcaatcaagttgttatatttgttaagagtgttagcaga
gctggggagctgaacaagctgcttatcgaatgcaatttcccgtcgatatgcattcactct
ggcatgtctcaggaagagaggctgactcactacaaaagcttcaaggaagggcacaagaga
attctggtggcgacagacttggtagggagaggcattgacattgagcgtgtcaacattgtc
atcaactatgacatgccagattctgctgatacataccttcacagggttggaagagctggt
aggtttggaacaaagggtcttgcaataacatttgtggcatcagcttcagactcggaagtt
cttaatcaggtacaagctaggttcgaggttgatataaagcaacttcctgagaatattgat
acctctacatacatgccgtcctaa
DBGET
integrated database retrieval system
