Raphanus sativus (radish): 108842027
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Entry
108842027 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108842027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108842027
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108842027
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108842027
Complex C
U5 SnRNP specific factors
108842027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
AAA_30
AAA_22
BRR2_plug
AAA_19
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
108842027
NCBI-ProteinID:
XP_018470327
UniProt:
A0A6J0MDZ8
LinkDB
All DBs
Position
2:complement(7481257..7489521)
Genome browser
AA seq
2171 aa
AA seq
DB search
MEKLGGGAEGHARSKQYEYRANSSLVLTSENPPPREPTGEPETLWGKMDPKSFGDRVAKG
RRPQELEDRLKKSKKKERDVGDDTASSRWSKRRRLRREESVLTDTDGDGVVYQPKTKETR
AAYEAFLSVIQKQLGGLPLSIAGGFADEILALLKNDALRNVEKKVEIKKLLRTEHDQINQ
VFDQLVSVGKLITDFQEGGDSVYGNANEGEGVNDVTVEIGDSEEDDEESDADVVPVEEDE
EDEEPQKTGGVQVDAGINKEDAGEGTSLNVQEIGAYWLQGKISEAYEQQIDPQQCQVLAE
DLLKILAEGDNMDVENKLVRHLEYEKFSLVKFLLRNRFKIVWCTRLARAKDQEERNRIEE
EMRGLGLELAAIVEQLHATRATAKEREEKVQKIINEEAGRLKDGTVGDGGRGRRDVADRD
LESGWLKGHRQMLDLESLAFDQGGLLMANKKCDLPAGSHRVHGKGYEEVHVPWVAKEVDI
SEKLVKIAEMPAWAQPAFMGMHQLNRVQSKVYETALFEADNMLICAPTGAGKTNVAMLTI
LRQIEVSKNGDGNYKVVYVAPMKALVAEVVSNLSNRLKDYGVTVRELSGDQSLSGKEIEE
TQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETT
KENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDSSYRPVPLDQQYIGISVRKPLQRFH
LMNELCYQKVVARAGTQQVLIFVHSRKETAKTAHAIVDTAMANNTISNFLKEDSASREVL
RSQIGLIKNGDLKRLLPYGFAIHHAGLTRGDREIVEALFGEGHVQVLVSTATLAWGVNLP
AHTVIIKGTQVYNPEKGAWMALSPLDVMQMLGRAGRPQYDEYGEGIIITGHSELQYYLSL
MNEQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWLGYTYLYVRMVRNPTLYGLAPDA
LVKDVVLEERRVDLIHTAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIATYN
EHLKPTMGDIDLYRLFSLSEEFKYVSVRQDEKMELAKLMDRVPIPIKETLEEPSAKINVL
LQAYISQLKLEGLSLTSDMVYITQSAGRLARALYEIVVKRGWAQLAKKALNLSKMVGKRM
WSVQTPLRQFHGIPNDILMKLEKKDLVWESYYDLTSQELGELIRSPKMGRPLHKFIHQFP
KLVLAAQVQPITRTVLRVELTITPDFQWDEKVHKYVEPFWVIVEDNDCEKILHQEYFLLK
KQYISEDHTLNFTVPIFEPLPHQYFVRVVSDKWLGSQTLLPVSFKHLILPEKYPPPTELL
DLQLFPVTALRNPNYERLYQDFKHFNPVQTQVFTVLYKTNDNVLVAAPTGSGKTICAEFA
ILKNHQEVLLRQEDDTKRQSGSDTTMRVVYIAPSEAVAKEQFRIWERKFGKGLGLRVVEL
TGETAFDLKLLEKSQIIISTPEKWDALSRRWKQRKFIQHVSLFIVDELHLVGEGQGGTVL
EVIVSRMRYVSSQGDNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHI
QGVDMSSFEARMLAMTKPTYAAIVQHAKNKKPAIVFVPTRNHVCLTAVDLMAYSHMDNPQ
TPDFLLGKLEELESFVNKISEESLKETLGHGVGYLHEGLCSLDKEIVTQLFEAGRIQVCV
MSSSLCWGTPLTAHLVVVMGTQYFDGRENSTSDYAVSDLLQMVGRASRPLLDNAGKCVIY
CHAPRKEYYKKFLYEAFPVESHLQHFLHNNFNAEVVAGVIENKQDAVDYLTWTFMYRRLS
KNPNYYNLQGVSHRHLSDHLSELVENIFSDLEASKCIAIEDEMDLSALNLGMIASYYYIS
YTTIERFSSLLSSKTKMKGLLEILSSASEYDMIPIRPGEEGRVQRLINHQRFLFENPNCT
DPHVKANALLQAHFSRQDIITDLEMDQREVLVSATRLLQAMVDVISSNGWLDLALLAMEA
SQMVTQGMWERDSMLLQLPHFTKDLAKRCQENNIETVFDLVEMEDEERQELLKMNETELL
DVARFCNHFPNIDLTYEIVGSEDVTPGKEVTLQVTLERDMEGRTEVGAVEAPRYPKTKEE
GWWLVVGDTKTNQLVAVKRVSLQKKAKVKLDFQVPSEAGEKLYTLYFMCDSYLGCDQEYS
FSVDVKESMEE
NT seq
6516 nt
NT seq
+upstream
nt +downstream
nt
atggagaagttgggaggcggtgcggaagggcatgctaggtccaagcagtatgagtacaga
gccaactccagcttggttctaaccagtgagaatcctcctcctcgagagcccacgggagag
cctgaaactctgtggggaaagatggatcccaagtcttttggagatcgagttgcaaaggga
aggaggcctcaggagctggaggataggcttaagaagtctaagaagaaggagcgtgatgtt
ggggatgatactgcttcttctcgttggagcaagaggcgtcggctcaggagggaggagagt
gtgctcacggatacggatggggatggtgtggtttatcagcccaagactaaggagacaagg
gctgcttatgaggcttttcttagtgttattcagaagcagcttggtgggttgcctctgagt
attgctggtggtttcgcagatgagatattggctcttctcaagaacgatgcattgaggaac
gttgaaaagaaggttgagattaagaagctgctgagaactgaacatgatcagattaatcag
gtttttgatcagcttgtttccgttgggaagttgatcactgactttcaagagggcggtgat
tctgtttatggtaatgcaaatgagggtgagggggttaatgatgtgactgttgagattggg
gatagtgaagaagatgacgaggagagtgatgctgatgtggtaccagtggaagaagacgaa
gaggatgaagaacctcagaaaactggaggtgtgcaggtggatgcagggataaataaagag
gatgcaggagagggcacgagtctgaacgttcaggagattggtgcatactggctgcaggga
aagatatctgaagcttatgaacagcagattgatccacaacagtgccaagtactcgctgaa
gacctgcttaagatactagcagaaggggataatatggatgttgagaacaagctggttagg
catcttgagtatgaaaagttcagtctcgttaagtttctactgcggaaccgctttaagatt
gtgtggtgcacccgtttggctagggcaaaagaccaggaagagaggaacagaattgaagag
gagatgagaggtttgggattggagttggcagcaattgtggagcagttacatgcaacaaga
gcaacagcgaaagagagggaggagaaggtgcagaaaattattaatgaagaagccggacgt
ttgaaggacggtactgttggagatggaggtcgaggcaggagagatgttgctgatagagat
ttagagagtggttggttgaagggccatcgtcagatgctggatctggagagtttggctttt
gaccaaggtggtctcctgatggcgaataagaagtgtgaccttccagctggctcccacaga
gttcatggcaagggatatgaagaagttcatgtgccatgggttgctaaagaggtggatatc
agtgagaagcttgtgaagatcgctgagatgccagcttgggctcaaccggcttttatggga
atgcatcagttgaacagggttcagagcaaagtgtatgagacagcgctatttgaggcagat
aacatgcttatttgtgctccaactggtgctgggaaaaccaatgtcgccatgctcaccata
ctgcgccaaattgaggtcagtaagaacggtgatggaaattacaaagttgtatatgttgca
cccatgaaagcgcttgtggctgaggttgtcagtaacctgtctaatcggctgaaggattat
ggagtcactgtaagggaactcagtggagatcagtcccttagtgggaaagaaattgaggag
acccagataattgtcaccacaccagagaagtgggatatcatcacgaggaagtctggtgat
cgtacttatacccagcttgtgagacttcttataatcgatgaaatccatcttcttcatgat
aatcgagggcctgtgcttgaaagcattgtcgctaggactcttaggcagattgaaaccacg
aaggagaatattcgcttggtgggtttgtcagctacactgccaaattacgaagatgttgcg
ttatttttgcgggttgatctgaagaaaggtttgtttaaatttgacagcagctacagaccg
gtgcctcttgatcagcagtatatagggatcagtgtgagaaaacctttgcagaggttccat
ctgatgaatgaactctgttatcagaaagtagtggctcgtgctggaacgcagcaggttctt
atttttgttcattcgaggaaggaaacagcaaaaactgctcatgcaatagtggacaccgca
atggcgaacaataccatcagcaatttcttgaaagaagacagtgcaagtcgtgaagttctt
cggagtcagattgggcttattaagaatggtgatctgaaaagacttctgccttacggattt
gctattcatcatgctgggctaacaaggggcgatcgtgagatagttgaggcgctttttggt
gaagggcatgtgcaagtcttggtttccacagcaactcttgcatggggtgtgaatttacct
gctcatactgttataatcaaaggaacacaggtctataatcctgagaaaggggcgtggatg
gcactcagtcccctggatgtgatgcagatgcttggtcgtgctggaagacctcagtatgat
gagtatggggagggtataattatcactggccacagcgagctgcagtattatctgtctttg
atgaatgagcagttgcctattgaaagccagtttatctccaaacttgctgatcagcttaac
gctgaaattgttcttggaactgtccagaatgctaaagaggcttgccactggcttggctat
acgtatctctatgtccgtatggttcgtaatccaacactgtatggtttagcgcctgatgct
cttgtaaaagacgtagtcttggaggaaagaagagttgacctgatacatacagctgctact
attttggacaaaaataacttggttaagtacgacaggaaaagtgggtatttccaagttact
gatttgggacggattgctagctactactatataagtcatgggaccatagctacatacaat
gagcatctgaagccaacgatgggtgatatagatctttatcgactgttctctctgagtgag
gagttcaagtatgtgtctgttcggcaagatgagaagatggaactggccaaacttatggat
cgtgtcccaataccaatcaaggaaactctggaggagcccagtgcaaagatcaatgttctg
ctacaggcatacatttcacagctaaagctcgagggcctttctttgacatcggacatggtt
tatataactcagagcgctggacgtcttgcacgagctctctatgaaattgtagtgaagcgg
ggatgggctcaactggcgaagaaagctctgaacttgtctaaaatggttgggaagaggatg
tggagtgtccagacacctcttcgtcagtttcatggaattccgaatgatattttgatgaag
ttggagaagaaggatttggtgtgggagagttactatgatctgacatcacaggaactagga
gagcttatccgtagtcctaagatgggcagaccgctccacaagttcatccaccagttcccg
aaattggttcttgcggcacaagttcagcctattactcgaactgttctgcgggtggagctc
acaattacaccagacttccagtgggacgaaaaagttcataagtatgttgagccgttttgg
gtcattgttgaagacaatgattgtgagaagatccttcatcaggagtattttctattgaag
aagcagtatatcagtgaggatcacactttaaacttcactgtcccaatctttgaaccgctt
ccacatcagtattttgtccgagtggtttcagacaagtggcttggctctcagactctgttg
cctgtatcttttaaacatcttatacttccagaaaagtacccaccacctactgagctactg
gacttgcagctcttcccagtcacggcccttaggaatccgaattatgagagactctatcaa
gatttcaagcacttcaatccggtgcagactcaggtctttacggttttgtataagactaat
gacaatgtgttggttgctgctccaacaggaagtgggaagactatatgtgcagagtttgct
atactgaagaatcatcaagaagtactcctaaggcaggaagatgatactaaaaggcaaagt
ggatctgatactacaatgcgtgttgtctatattgcaccgtcggaggctgttgctaaagag
cagtttcgcatctgggagaggaagtttgggaagggtcttggtttaagggttgttgagctg
actggggagacagcgtttgatcttaagctgcttgagaaaagtcagataattataagtacc
cctgagaaatgggatgctctttcccgcaggtggaaacagagaaaattcattcaacatgtt
agtctgttcattgtggacgagcttcatcttgttggcgaaggtcaaggtggtactgtgttg
gaggtaatagtctctagaatgagatatgtttctagtcagggagataataagatcaggatt
gttgcgctttccacttctcttgctaatgcgaaagatcttggggagtggattggggccagt
tcccacggccttttcaactttcctcctggagtccgtcctgttccactggagatccacatt
caaggagtagatatgtccagtttcgaagctagaatgctggcaatgaccaagccaacctac
gctgccatagtccagcatgccaagaacaagaagccggctattgtttttgttccaacccgt
aatcatgtctgcttgactgctgtggatctgatggcttactctcatatggacaacccacag
acccctgatttcctgttaggtaagctagaagaacttgagtcttttgttaataaaatcagc
gaggaatcattgaaggagacactgggccacggtgttgggtacttgcacgagggtttatgc
agtctggataaggagattgtgacgcaactctttgaagctggacggattcaggtatgtgtg
atgagcagttcattgtgttggggcactccattaactgcacatctggtggtggtaatgggg
acacagtactttgatggaagggaaaattcaacttcagattatgcggtctctgatttgctt
cagatggtggggcgtgctagccgacctttacttgacaatgctggtaagtgtgtgatatac
tgtcatgcacctcgtaaagagtattacaagaagtttctttatgaagcctttcctgtggaa
agtcatctccagcatttcctgcataataatttcaacgcagaagtggttgctggggttata
gagaacaagcaagatgctgtggattatcttacatggacttttatgtacaggaggctttcc
aagaatcctaactactacaatcttcaaggagttagccacaggcatttgtctgatcaccta
tcagagctggttgagaacatcttttctgatcttgaagccagtaaatgcattgcgatagag
gatgagatggacctctctgctctcaaccttggtatgattgcatcctattattacatcagt
tacaccaccatcgagcgtttcagttctcttttgtcttctaagactaagatgaagggactt
cttgagatcttatcatcggcttcggagtatgacatgatccctatacggccaggtgaagag
ggcagagttcagaggctcatcaatcatcagaggttcttgtttgaaaacccaaactgcaca
gatcctcacgtgaaagcaaacgctcttctccaggctcatttctcgaggcaggacattatc
acggacttagaaatggatcagcgtgaggtccttgtatcagcaaccagacttcttcaagca
atggttgatgtgatatccagcaatggctggctggatcttgctctgttagcaatggaagca
agccagatggtgactcaaggcatgtgggagcgagactcgatgcttttacagctccctcac
ttcacaaaggacttggcaaagagatgccaggagaataacattgaaactgtattcgatctt
gtggagatggaggatgaagaacgccaagagcttctcaagatgaatgagactgagctttta
gacgttgccagattctgcaaccacttcccaaacattgacctgacttacgagattgtgggc
agcgaagatgtgacaccagggaaagaggtgacactgcaggtgacgcttgagagagacatg
gaggggaggacagaagtgggagcagtggaagcacccaggtatcccaagaccaaagaagaa
gggtggtggctggttgttggggacacaaagactaaccagttggtggccgtcaagcgagtc
tcgttgcagaagaaagccaaggtgaagctggatttccaagtaccgagtgaagcaggggag
aagctatacacgctctacttcatgtgcgactcctacttgggttgtgaccaggagtactcc
ttctctgttgatgttaaagaatcaatggaagaatga
DBGET
integrated database retrieval system
