Raphanus sativus (radish): 108842035
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Entry
108842035 CDS
T06014
Name
(RefSeq) phytochrome E
KO
K12123
phytochrome E
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
108842035
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
108842035
NCBI-ProteinID:
XP_018470339
UniProt:
A0A6J0ME07
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Position
2:complement(30646826..30650626)
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AA seq
1106 aa
AA seq
DB search
MGFESSSSAASNMKPQKSNTAQYSVDAALFADFDHSVYSGKSFDYSKSMISPPNNVPDEH
ITAYLSNIQRGGLVQPFGCLLAVEEPSFKILGVSDNCIDFLGLSLASTEFNVKGLIGIDA
RTLFTPSSGASLAKAASFTEISLMNPVLVHSRTSQKPFYAILHRIDSGIVIDLEPAKSAD
PALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVYQFHEDDH
GEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAAPVKVVQSDELKRS
LCLVNSTLRAPHSCHTQYMANMGSVASLVLAIVTKSKNSSKLWGLVVGHHCSPRYVPFPL
RYACEFLMQAFGLQLQMELQIASQLAEKKAMKTQTLLCDMLLRDTVSAIVTQSPGIMDLV
KCDGAALCYKGKCWLVGVTPSESQVKELVKWLVENNHGDESTGLTTDSLVDAGYPGAVSL
GDAVCGVAAAGISSKDYLIWFRSNTASAIKWGGAKHHPKDRDDAGRMHPRSSFKAFLEVA
KSRSLPWETSEIDAIHSLRVIMRESFTSSRPVLSSSGGNNGVGRDANELTSFVCEMVRVI
ETATAPIFGVDSSGCINGWNNKTAEMTGLGASEAMGKSLADEIVLEESRGALESLLSKAL
QGEEKKNVMLKLRKFGHHHPPPDSSSSDVCVLVNSCTSRDYTEKIVGVCFVGQDMTSEKA
ITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKHEVIGRMLPG
GVFGDLCKVKCQDALTKFLISLYQGIAGDNVPESSLVGFFNKEGRYIEASLTANKSTNTE
GKVIGCFFFLQIINKESSSSSCSHSLDELAYIRQEVKNPLNGIRFAHKLLESSEISENQR
QFLETSDACEKQIATIIQDTDLKSIEEGKLQLETEEFRLESVLDTIISQVMIMLRERKSQ
LRVEVAQEIKTLPLYGDRVKLQLILADLLRNIVNHAPFPDSWVGIKISSSHKLAHNNNPY
IHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLLEQMNGRVSYVREDERC
FFQVDLQVKTRLGVETRGTEAGSSIQ
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagagctcttcctcagccgcaagcaacatgaaaccacaaaagtccaacacc
gctcaatactccgtcgacgccgccctcttcgccgacttcgaccactctgtctactccggc
aagtccttcgactactccaagtccatgatctctcctcccaacaacgtccccgacgagcac
atcaccgcttacctctccaacatccagagaggcggcctcgtccagcccttcggctgcttg
ctcgccgtggaagagcctagttttaagatactcggtgttagcgacaactgtatcgacttc
ctcggcctctctctcgcttctaccgagtttaacgtcaagggtctgatcggtatcgatgcg
aggactctgtttactccttcctcgggagcttccttggctaaagctgcttcctttaccgag
atttcgttgatgaaccctgtcctggttcactccagaacctcccagaagcccttctacgct
attcttcataggattgattcagggattgtgattgacttagagcctgctaagtcagctgac
ccggctttgactcttgccggtgcggttcagtctcagaagctagccgttagagccatctcc
aggctccagtcgcttccgggtggagacattggcgccttgtgtgacaccgttgtggaagat
gttcagaggcttactggctacgaccgtgtgatggtctaccagtttcacgaagatgatcac
ggtgaggttgtttccgagattaggagatctgatctggagccttacttgggtttgcattac
cccgcgactgatattccccaagccgcgaggttcttgtttaaacagaaccgtgtgaggatg
atatgtgattgtaatgcggctccggttaaggttgttcagagcgatgagctcaagagatcg
ctttgtttggttaattctaccctgagagctcctcatagctgccatactcagtacatggcg
aatatggggtctgttgcatctctcgtgcttgcaatagtgaccaaaagcaaaaactcgagc
aagctctgggggttagtggtgggtcatcactgttctcctaggtacgtacccttcccgttg
cggtacgcttgcgagtttctcatgcaggcgtttggactccagcttcagatggagcttcag
atagcgtcgcagttggctgagaagaaggctatgaagacgcagaccttgctgtgcgatatg
cttctccgcgacaccgtctctgctatcgtgacgcagtctcctggtatcatggacctcgtg
aagtgcgatggagctgctttgtgttacaaggggaagtgctggctcgttggtgtgactccc
agcgagtcgcaggttaaagagctggtgaagtggctggtggagaataatcacggtgatgag
tcgacgggtttgactactgatagtttggtggatgctggataccctggtgctgtctcgcta
ggagacgcggtctgtggcgtggctgcggcggggatctcttctaaagattacttgatttgg
ttcaggtccaacactgcaagtgccatcaaatggggaggagctaaacatcatcccaaggat
agagacgatgctggaagaatgcatccgaggtcgtcttttaaagcgtttcttgaagttgca
aagagcaggagcttgccttgggaaacctctgagatcgacgcgattcattcgctgagggtt
ataatgagagagtcgtttacaagctctaggcctgtgttgtcgtcgtctggtggtaataat
ggtgtggggagagatgcgaatgagcttacttcttttgtgtgtgagatggttagagtgatc
gaaaccgcgaccgcgcctatctttggtgttgattcttctggatgtatcaatggttggaac
aataaaaccgctgagatgacggggttgggagctagtgaagccatggggaagtcgcttgcc
gatgagattgttctagaggaatcacgtggagctcttgagagtctcttgtccaaggcgtta
caaggtgaagagaagaaaaacgtgatgcttaaactgagaaagtttggtcatcatcatcct
cctccggattcttcttcttctgatgtgtgtgttcttgttaactcctgcacgagtagggac
tatacggaaaagatcgttggtgtttgcttcgttggtcaagacatgactagtgagaaagca
ataacggataggttcatcagactgcaaggagactacaagactattgttcaaagcttaaac
cctttgatcccacctatattcgcatctgacgagaacgcttgttgctcggagtggaacgca
gccatggagaagcttaccgggtggtcaaagcacgaggtgattgggagaatgctacctggt
ggagtctttggagatttatgtaaggtgaagtgccaagatgcactcacaaagttcttgatc
tctctgtaccaaggcattgctggtgataatgttccagagagttcgcttgttgggttcttt
aataaagaagggaggtacatagaagcatccttgacggcgaacaagagtacaaacactgaa
gggaaagtcatcggatgtttcttcttcttgcagattatcaataaagaatcgagttctagt
agctgttctcatagcctcgacgagttggcttacataaggcaagaagtcaagaaccctctt
aacggtatccggtttgcacataagcttcttgaatcctcagagatttcagagaaccaaagg
cagtttctggagaccagtgatgcttgcgagaagcagattgcaacaataatccaagacact
gacttgaaaagcattgaggaaggcaagttgcaactggaaacagaggagtttcgacttgag
agtgttttggacacaatcattagccaagtgatgattatgttgagagagaggaagtcacaa
ctcagggttgaagtagctcaggagattaaaactctgcctctctatggagacagagtaaag
cttcagctcattcttgctgatcttctgcgcaacattgtgaatcatgccccgtttccagat
agttgggtaggaatcaagatctcatcaagccacaagcttgcacacaacaataatccctat
atccatctacagttcaggatgatacatcctggaaaaggacttccttcagagatgctaagt
gatatgtttgagactagagatggatgggtcacgcctgatgggttaggactaaagctttca
cggaaactgctggagcagatgaatggtcgtgtgagttatgtcagagaagacgaacgttgt
ttctttcaagtggatcttcaggtcaagacaaggttaggtgttgagaccagaggaacagag
gctggttcaagtatacagtag
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