Raphanus sativus (radish): 108842107
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Entry
108842107 CDS
T06014
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00900
Terpenoid backbone biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
108842107
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rsz01006
]
108842107
Enzymes [BR:
rsz01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
108842107
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
108842107
2.5.1.29 geranylgeranyl diphosphate synthase
108842107
Prenyltransferases [BR:
rsz01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
108842107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
UbiA
Motif
Other DBs
NCBI-GeneID:
108842107
NCBI-ProteinID:
XP_018470422
UniProt:
A0A6J0MDB6
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All DBs
Position
2:37721052..37722503
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AA seq
368 aa
AA seq
DB search
MASSVTPLGPWVLHHHHPSTIITQSKTPRSRSHSLVTLKPISLTPKRTVSYTVSSSLVTK
EDSNLKSTTSSFDFMSYILRKAESVNRALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVL
CIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDDDDLRRGKPTNHKVFGEDVAV
LAGDALLSFAFEHLATATCSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLND
VGLDHLEYIHLHKTAALLEASAVLGGIVGGGSDEEIERLRKFARCIGLLFQVVDDILDVT
KSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALA
NYIANRQN
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcagtgactcctctaggtccatgggttcttcaccatcaccacccttcaact
atcattacccaatccaaaacacccagatccagatctcattccctcgtcacccttaaaccc
atctccctcaccccaaaacgcaccgtttcgtacaccgtttcctcttccctcgtcaccaaa
gaagacagcaacctcaaatccaccacctcctccttcgatttcatgtcttacatcctccgc
aaagccgagtccgtcaacagagccctcgactccgccgtgcctctccgcgagccgctcaag
atccacgaggcgatgcgctactccctcctcgccggaggcaaacgcgtcaggcccgtcctc
tgcatcgccgcgtgcgagctcgtcggcggggaagagtctctagccatgccggcggcttgc
gccgtggagatgatccacaccatgtcgctgatccacgacgacttgccttgtatggacgac
gacgatctccgccgcggaaagccgacgaaccacaaagtgttcggcgaggacgtggcggtc
ttggccggagacgcgcttctctcgttcgccttcgagcatttagcaactgccacgtgctcg
gaggtttctccggcgagagtggtcagagctgtgggggagttggcgaaagccatcggcacg
gaagggctcgtggctggacaggtggtggatataagcagcgaaggtttggacctaaacgac
gtcggattggatcatctggagtatatacatttgcataaaacggcggcgttgcttgaagct
tccgcggttttgggtgggatcgttggtggagggagcgacgaagagatcgagaggctgagg
aagttcgcgaggtgtatcggtttgttgtttcaggtggttgatgatatcttggacgtcacg
aaatcgtctcaagagcttgggaaaaccgctgggaaagatttgattgctgataagttgacg
tatccgaaactcatgggtttggagaaatcgagagagttcgctgagaagttgaatagagag
gcacgtgatcagcttttagggtttgattccgacaaggttgctcctttgctggctttggct
aactacattgccaatagacagaactga
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