Raphanus sativus (radish): 108842268
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Entry
108842268 CDS
T06014
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108842268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108842268
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108842268
mRNA cycle factors
Common to processing body (P body) and stress granule
108842268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
108842268
NCBI-ProteinID:
XP_018470635
UniProt:
A0A6J0MDR9
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Position
2:18949094..18953902
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AA seq
1055 aa
AA seq
DB search
MDKSTASSPWERAQSLFDKTIELEAKRHKAAQSRTPSDPNLWHQIRENYESIVLQDHAFS
EQHTIEFSLWQLHYKRIEEYRSNINAVLASGSSSAAQNAKGPSVTDRVARLKLKFRTFLS
EATGFYHEMILKIRAKYGLPLCYFSEDQESQNLGDKDGKKLAQVKKGLVSCHRCLIYLGD
LARYKGLYGEGDSKNREYAAASGYYLQAASLLPASGNPHHQLAIIASYSGDEFAATYRYF
RSLAVESPFPTARDNLIVAFEKNRQSYAQLLAASKDSSTKPNGKGRGKGKGQDNPSKDAN
VASVPEKDKVTSANEMLKAFCIRFVRLNGILFTRTSLETFFDVLASTSMSLRELVTSSLM
EELVFGKDTSDSALFIVRLVTILIFSTHTPKKGIDSKKETDGQSYAEIVQRVEPARNSLT
ASFQLLGHVVEQCAQLLDPSSSYFLPGVLVFIEWLACRPDIASSSDPDERLTAVRNSFWN
RCVAFFNQILSLGYIDDVEEETCFSNMSMYDERETENRLALWEDYELRGFLPLLPAQTIL
DFSRKHSFGTEGPKEKKARIKRILAAGKALTSVIKVDQSCVYFDSKKKKFLVGVKPLGDL
LDSHSSPPKADNALQDNQAMMNHKTLVLQRDQQIYLGEEEDDEEEEIVFKPLVTEKKNGA
CHQTYVPNGGSKNPDQVPNGGFRNPDQVATMGDLKALTISDEAFHGNMLLQPRGNAAVQV
PASVGSNLLGHLLPSMQSQGVQLQQPQTQAVHPQQAQSLASARVQPQQSQVSQLQPHQSQ
VSQLQPHQSQVSQLQPLQSRTVHFQQTQGQISHVSRVQPHSTSLSGSNWLPTEAARSLSG
FAQMGNGPVMRNGMQGNPGFSYYPAHSLPIHQSFNVNGMGGMPYSQTRTPEAGLPSMSNT
VSSSGVIADGLGVQSSVARKTPIGRASRHLGPPPGFNSVPSKLVKEPAPGPDMSGNNPQV
DDYSWLDGYQGQSSRGTGFNSSLNYASSEKPEHMGTGNGLSRPANFPFPGKQAPSSQIQE
EFPYVQHPQRDNNDQSAQLPDQSQGQPSWPSRRFV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagtactgcttcctccccatgggagagagcccaatccctattcgataagact
attgagttagaagccaagcgtcacaaggctgcacagtctaggaccccgtctgaccccaat
ttgtggcaccaaattcgcgagaattacgaatccatcgttctccaagaccatgctttctct
gagcagcacaccattgagttttcgctttggcagttgcattacaaacggatcgaggagtat
aggtcgaacatcaacgctgtcttggcttctggaagctccagtgcggctcagaatgcaaag
ggtccttctgtgaccgaccgagttgcgagactcaagctcaagttcagaactttcctttcg
gaagcaactgggttttaccatgagatgatcttgaaaattagagccaagtatggtctcccc
ttgtgttacttttccgaggatcaagagagtcagaatctgggtgataaggatgggaagaag
ttggcccaagttaagaaaggcttggtatcttgtcaccgttgtttgatataccttggtgat
cttgctcggtacaaaggattgtatggggagggagattccaagaaccgagagtatgccgct
gcttctggttactatttgcaagcagcttctctattgccagccagtggaaacccacatcat
cagcttgctataattgcttcttattccggggatgagttcgctgcaacatatcgttatttc
cggagcttggccgtggagagtcctttcccaactgcccgtgacaacttgattgttgctttt
gaaaagaatcgtcagagttatgcccaattgcttgcggcttccaaagactcatctacaaag
ccgaatggtaaaggaagaggcaaaggcaaaggccaagataatccatcgaaagatgcgaac
gtggcttctgttcctgagaaggataaagttactagtgcaaatgagatgctgaaagcattc
tgcatcagatttgttcgtctcaacgggattctttttacccgaacaagcctggagacattc
tttgatgttcttgcttccactagcatgagtctacgagagctggttacttcaagcttaatg
gaagagctggtttttggcaaagacaccagtgacagcgcactcttcattgttagactggtg
acgattcttatattcagtactcatacccctaagaaagggatagactccaagaaagagaca
gatggtcagtcatatgccgagattgtacagcgtgtggagcctgctagaaactccttaaca
gcaagttttcagttacttgggcatgtggtagagcagtgtgcgcaactgcttgacccttcg
tcaagttatttcttgcctggcgtcttagtttttattgaatggttggcatgtcgtcctgat
attgcatcgagcagtgatccggatgaaagactgactgctgtgagaaacagcttttggaac
cggtgtgttgccttcttcaatcaaatcttgtcgcttgggtatattgatgatgtcgaagag
gaaacttgcttctcaaacatgagcatgtatgatgaacgagaaactgaaaaccgtctcgca
ctgtgggaagactatgaattaagaggattcttgccattgcttccagctcagactattctc
gacttctcaagaaaacattcctttggaactgaaggtcccaaggaaaagaaagctcgtatt
aagaggatcctagcagccgggaaagcattgaccagtgtgatcaaggttgatcagagttgt
gtgtattttgattcaaagaagaagaagtttcttgttggtgttaaaccgttgggtgacttg
ctggattctcattcaagcccacctaaagctgataatgctttacaagataaccaagcaatg
atgaatcataaaactctagtgctgcaacgagatcagcagatctacttgggtgaggaggag
gatgatgaagaagaagaaattgttttcaaacctctagttactgagaagaagaatggggct
tgtcaccaaacctatgttcctaatggaggctcaaagaatcctgatcaagttcctaacgga
ggcttcaggaaccctgatcaagttgcaactatgggggacttaaaagctctgactatttca
gatgaagcttttcatggaaatatgcttctgcagccaagaggcaacgcagctgttcaagtg
cctgcgtctgttggttctaaccttctgggacatcttctgccgtcaatgcagtctcagggt
gtgcagttgcaacaacctcagacacaggcagtgcatcctcagcaagctcaatcgctggct
tctgcacgggtacaaccacagcaatcacaggtttcacagcttcaaccacatcaatcacag
gtctcacagcttcaaccacatcaatcacaggtctcacaacttcagccactgcaatcacga
actgtgcattttcaacaaactcagggacagatttcacatgtttcacgggtacagccacat
tctacttcccttagtggtagcaactggttaccaacagaagctgctaggagcctatctggt
tttgctcagatgggtaatggtcctgtgatgaggaacgggatgcaaggaaatcccggattt
tcctattaccctgcacactcgttaccgatccaccagtctttcaatgtcaatggtatgggt
ggtatgccatattctcagacacgaacaccggaagctgggttgccatccatgagtaatact
gtttcatcttctggagttattgctgatggcctgggtgtgcagtcttcagtagcaagaaaa
actccaatcggtagagcctccaggcatctcgggcctccacctgggtttaactctgtcccc
tctaagctggtaaaggagccagcacctggtccggatatgtctggtaacaatccgcaggtt
gatgattacagctggttggatggataccaaggccaatcttctcgaggcaccggtttcaac
agttctttgaattacgcttcttctgaaaaaccagagcacatgggtaccggtaatggacta
agcaggcctgccaactttccgttccctggaaaacaagctccatcatcacagatccaagaa
gaatttccctatgttcagcatcctcagagagacaacaacgatcaatcagctcaactccca
gatcaaagtcaaggacagcccagttggccgagccgtcgctttgtgtga
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