Raphanus sativus (radish): 108842273
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Entry
108842273 CDS
T06014
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108842273
Membrane trafficking [BR:
rsz04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108842273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
Motif
Other DBs
NCBI-GeneID:
108842273
NCBI-ProteinID:
XP_056858981
UniProt:
A0A9W3D532
LinkDB
All DBs
Position
2:complement(29678969..29690388)
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AA seq
1827 aa
AA seq
DB search
MENNNNSNLRFRKIPRQPLSLPKLEPLLDGNLEQWPHLNQLVQCYGTEWVKDVNKYGHYE
TTRPDTFQTQIFEGPDTDTETEFRLASARSASLEEDVASVSGTPFTDSGSPKHFGLPPLP
AYEPAFDWDNERSMIFGQRTPESPAATYSSGLKISVRVLSLAFQSGLVEPFYGSISLYNQ
ERKEKLSEDFYFHISPTEMQDAKPSSENRGVFYLDAPSASVCLLIQLEKTATEEGGVTTS
VYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAVVPLFDNNIITNTGESASPSSPLAPS
MTASSSHDGVFEPMAKITSDGKQGSSGGSSVVVEISNLNKVKENYSEESIQDPKRKVHKP
VKGVLRLEIEKHRNGHGDVEDLSENGSIRNESLDLTDRLGDLTLMKCPSSGSGGPHNSGS
KWNTEDVSKNLTSSSGNVDNCYYAFDFCSTTRNEPFLHLFHCLYVYPVAVTLSRKRNPFI
RVELRKDDTDVRKQPLEAIYPREHGVSLQKWAHTQVAVGARAASYHDEIKVSLPATWTPS
HHLLFTFFHVDLQTKLEAPRPVVIGYASLPLSTYIHSRSDISLPVMRELVPHYLQETTKE
RLDYLEDGKSIFKLRLRLCSSLYPTNERVRDFCLEYDRHTLRTSPPWGSELLQAINSLKH
VDSTALLQFLYPILNMLLHLIGNGGETLQVAAFRAMVDILTRVQQVSFDDADRNRFLVTY
VDYSFDDFGGNQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLLMAWFFLELIVKSMAL
EQARLFDHNLPSGEDVPPMQLKESVFRCIMQLFDCLLTEVHERCKKGLSLAKRLNSSLAF
FCYDLLYIIEPCQVYELVSLYMDKFSGVCQSILHECKLTFLQIISDHDLFVEMPGRDPSD
RNYLSSILIQELFLSLDHDELPLRAKGARILVILLCKHEFDARYQKAEDKLYIAQLYFPF
VGQILDEMPVFYNLNATEKREVLIGVLQIVRNLDDASLAKAWQQSIARTRLYFKLMEECL
ILFEHKKAADSILGGNNSRGPVSEGTGSPKYSERLSPAINNYLSEASRQEVRLEGTPDNG
YLWQRVNSQLASPSQPYSLREALAQAQSSRIGASAQALRESLHPILRQKLELWEENVSAT
VSLQVLEITEKFSSMAASHNIATDYGKLDCITTILTSFFSRNQSLAFWKAFFPIFNRIFD
LHGATLMARENDRFLKQIAFHLLRLAVYRNDSVRKRAVIGLQILVKSSLYFMQTARLRAL
LTITLSELMSDVQVTHMKTDNTLEESGEARRLQLSLSEMADEAKSVTLLRECGLPDDTLL
VIPEKFTENRWSWTQVKQLSDSLVLALDASLGHALLGSVMAMDRYAAAESFYKLGMAFAP
VPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVIMQALVARNDGVWSKDHVSALRKIC
PMVSGEFTTEASAAEVEGYGASKLTVDSAVKYLQLANKLFSQAELYHFCASILELVIPVY
KSRKAYGQLAKCHTLLTNIYESILDQESNPIPFIDATYYRVGFYGEKFGKLDRKEYVYRE
PRDVRLGDIMEKLSHIYESRMDSNHILHIIPDSRQVKAEELQAGACYLQITAVDAVMEDE
DLGSRRERIFSLSTGSVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVLQTEGSFPAL
VNRLLVTKSESLEFSPVENAIGMIETRTTALRNELEEPRSSDGDHLPRLQSLQRILQGSV
AVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQE
FHTQLVNGFQSLTAELSHYIPAILSEL
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaacaacaacagcaaccttcgcttccgcaagattccacggcagcctctttct
ctccccaagctcgaacctttgcttgatgggaatctagaacagtggccgcacttgaaccaa
ttggttcagtgctacggaacggagtgggttaaggatgttaataagtacggtcactacgag
actacccgacctgatactttccaaactcagatttttgaaggtcccgacactgatactgag
actgagttccggcttgctagtgctaggagtgcttcattggaagaggatgtcgccagcgtt
tctgggacgccttttactgattctggatcccccaagcattttgggttacctccgctccct
gcttatgaacctgcttttgactgggataatgaaagatctatgatttttggtcagagaact
cctgagtctcctgctgctacctattccagtgggttgaagatttctgtcagagttttgtct
ttagcttttcagtctggcttagttgaaccattttatggctccatttcattgtacaaccaa
gagaggaaggagaaactctctgaggatttttatttccatatttcgcctaccgaaatgcag
gatgccaaaccttcatctgaaaatcgtggagtgttttatctagatgccccatcagcatca
gtttgcttgctgattcaattagaaaaaacagcaacggaggagggaggcgttacaacatcc
gtctattcccgtaaagaacctgtgcacttaactgaaagggaaaagcaaaagttgcaggtc
tggtcccgcattatgccttaccgagagtcttttgcctgggcagttgttccgctttttgat
aataatatcatcacaaacactggtgaatcggcttcccctagcagtcctcttgctcccagt
atgactgcctcaagttcccatgatggtgtttttgaacccatggcaaagatcacatcagat
ggaaagcaaggttcttcaggtggaagttccgtcgtagttgaaatatctaatttaaacaaa
gttaaggagaactactctgaggagtcgattcaggaccctaaacggaaggttcataaacct
gttaaaggagttctaagactggaaattgagaaacataggaatggacatggagacgttgaa
gatctatctgagaatgggagtatcagaaatgaatctcttgatctgactgaccgcctcggt
gacctgacgcttatgaagtgtcccagttctggttccggtggaccccataacagtggttcc
aagtggaatacagaggatgtttcaaagaacctaacgagctcaagtgggaatgttgacaat
tgttattatgcttttgatttctgctctacgacaagaaacgagccttttctacatctcttc
cattgcctttatgtgtatcctgtagctgttactttgagtcggaagaggaatccctttatc
cgagtagaactgagaaaggatgacacagatgtccgaaaacaaccactggaggcaatatat
ccaagagagcatggtgtgtcactccagaagtgggctcacacacaagttgctgttggagct
agagctgctagttaccatgatgaaattaaggtgtctctccctgccacctggacgccatca
catcatctgctattcactttctttcatgttgatcttcagacaaagcttgaagctccaaga
ccagtagttattggatatgcatcacttccgttatctacatatatccactcacggtctgat
atttctcttccagttatgagagaactggttccccattatcttcaagagaccaccaaggag
aggttagattatttggaagatggcaagagtatttttaagttgcgactgagactttgttca
tcgctttatcccaccaacgaacgtgtcagggatttctgtctagaatatgatagacatacc
ctccgaacaagccctccctggggttcagaactgttgcaggcaattaacagtttgaagcac
gttgactccactgccctgcttcagtttctctacccaattcttaacatgctccttcatctt
attggcaatggtggagaaactctccaggtggcagcattcagagccatggtggatatttta
actcgggtgcagcaggtgtcgtttgatgatgctgaccgaaatcgttttctggtcacctat
gttgattattcttttgatgattttggaggcaatcaaccaccggtttatcctggattatca
actgtgtggggaagtttagctagaagcaaggctaaaggttaccgggttggacctgtatat
gacgatgttttattaatggcgtggtttttcctcgagttaattgttaaatcaatggcattg
gagcaggcacgtctttttgatcacaatctaccttcaggcgaggatgttccacccatgcag
ctcaaagaaagtgtctttcgatgtatcatgcaattgtttgattgtcttttgactgaagta
catgaacgttgtaaaaagggtctaagcttggcaaaacgtctgaacagcagtttggccttt
ttctgctatgatcttctatatatcattgagccctgccaggtctatgaattggtatcgtta
tacatggacaagttctctggtgtttgtcagtctatcctacacgagtgcaagctcacattt
ttgcaaattatctccgatcatgatctctttgtagaaatgcctggcagagacccatcagac
aggaactatttatcatccatcttaatacaggagctatttctctcccttgatcatgatgag
ctgcctctgcgggcaaagggtgcaagaattttagtgatcctcttgtgcaagcatgaattc
gatgctcggtaccagaaagcagaagataagctgtatattgcacaactatattttcctttt
gtcgggcagattttagatgaaatgcctgttttctataacctaaatgctactgaaaagcgt
gaggttttaatcggtgtgctgcaaattgttcgaaatctggatgacgcatcacttgccaag
gcatggcagcagagcattgctcgtacgagattgtatttcaaactcatggaagaatgccta
atactttttgagcacaagaaagctgctgatagcatcctcgggggcaacaattctcgcggg
cctgttagtgaaggaactggatcaccaaagtactccgagcgactttctcctgctatcaac
aattatctatcagaggcttcccgccaagaagtcaggctagagggaacgcctgataatggg
tacctgtggcaaagagttaattctcagttggcctcccctagccaaccttattctctaaga
gaagctttagctcaagcacaatcttcgcggattggagcttcagctcaggcattgagagaa
tcgctacaccctattttgaggcaaaaactggaactatgggaagagaatgtaagtgccact
gttagcctccaggttttggagatcactgagaaattttcatcaatggcagcctctcacaac
attgctacggattatggcaaattggactgcattactacaatattgacgagtttcttctcc
cgaaaccagtcattagccttctggaaagccttctttccaattttcaacagaatctttgat
cttcacggagccacactgatggccagggaaaacgatcgcttcttaaaacagatagccttc
catcttctccggcttgctgtttaccgaaatgacagtgtcaggaaaagagccgttattggt
cttcaaatactagtcaagagctcgctatattttatgcagactgctcggctgagggctttg
ctgaccattacactgtcagaactcatgtcggatgtccaagtaactcatatgaaaacggat
aatacattggaagagagtggagaggcaaggcggcttcaactgtcattaagcgaaatggct
gatgaagctaagagtgtcactctgttgagggagtgtggtcttcctgatgatactctgttg
gtaattcccgagaaatttacagaaaaccgctggtcttggacgcaagtgaaacaactttct
gacagccttgttctcgctcttgatgcgagcctcgggcacgcccttttgggatctgtgatg
gctatggatcgatatgctgcagcagagagcttctacaaacttggaatggcatttgctcct
gttccggatcttcacataatgtggttgttgcacctatgtgatgcccaccaggaaatgcag
tcctgggctgaagctgcacagtgtgctgtggcggttgcaggtgtgattatgcaggccttg
gtggctagaaatgatggtgtttggagcaaggatcacgtgtctgccttgcgtaaaatttgc
cccatggtaagtggcgagttcacgacggaggcatccgcagctgaagtcgagggttatggt
gcttcaaagctaacggttgactctgccgtcaagtatctacagcttgcaaataagctcttc
tctcaagccgagctctaccatttctgtgcaagcattttggagcttgttatcccagtttac
aagagcaggaaggcttatgggcagttggctaagtgtcacacgctacttactaacatatac
gagtccattcttgaccaagaatcaaaccctatcccttttatcgacgccacgtattaccgg
gtgggattctacggggaaaagtttgggaagctggacaggaaagaatatgtataccgtgaa
ccacgagatgtgcggcttggggatataatggaaaagctgagccatatatacgaatcgagg
atggacagcaaccatattcttcacatcattccagattcgagacaagtgaaggctgaagag
ttgcaagcaggagcgtgctacctgcagatcactgcggttgatgcagtcatggaagatgag
gatcttgggagcagaagagagaggatattttctctttcgaccggaagtgttcgagcacga
gtctttgaccggttcttgtttgatacaccgtttacaaagaacggtaagacgcagggtggg
ttagaagatcaatggaagagacgaacagtgctgcagacagagggctcattcccggctctt
gtgaacaggctgttggttactaaatccgaatcgcttgaattctcgcctgtggagaatgca
attgggatgattgaaaccagaacaaccgcactgagaaacgagctagaggagcctcgtagc
tcggacggggatcacttgccacggcttcagagtctgcagaggattctccaaggaagtgtt
gcagtgcaggtcaacagtggggtgttgagtgtttgcacagccttcttatcaggtgagcct
gcaacgagattgcgttcgcaagaactgcagcaacttatcgcggcacttcttgaattcatg
gcggtttgcaagcgagccataagggttcacttcagattaatcggagaagaagaccaggag
ttccatactcagctcgtcaatggatttcagtctcttaccgcagagctctcacattacatt
cctgctatcttgtccgaactttag
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integrated database retrieval system
