Raphanus sativus (radish): 108842323
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Entry
108842323 CDS
T06014
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108842323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108842323
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108842323
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
108842323
NCBI-ProteinID:
XP_018470695
UniProt:
A0A6J0MDX8
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Position
2:complement(35848633..35850319)
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AA seq
219 aa
AA seq
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MGEEARVLGIESREENATGRNHDSVVDLYPLSSYYFGSREAVRVKDEMITDRVARLKSNY
AAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLRRKLASKLSV
NENVLVPGLEVGECIGMWRRPNFETSMYPFLPPNVKHPKECLKLFLGRLALHQQFVVPKN
FKLLAVPLCQIHENEKTYGPIISQIPKLLSKFSFNMMEI
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagaagctcgagttttaggtattgagagcagagaagagaacgcgacggggaga
aaccatgactcggtagtagatttatacccgcttagtagctactacttcggttcgcgagaa
gctgttcgcgtcaaggacgagatgatcactgatcgtgtcgccagattgaaatcgaattac
gctgctcatggtttgaggacttgtgttgaagctgttcttctggttgagttgttcaagcat
cctcatgttttgcttcttcagtatagaaactccatcttcaagcttcctggtggtcgtttg
agacccggtgaatcagatattgaaggtctgagacgcaaacttgcttcaaagctttcggtt
aacgagaatgttcttgttccgggtttggaggtgggagaatgcattgggatgtggcggaga
ccaaactttgaaacatccatgtatccattcttgccacccaatgtgaaacatccaaaggaa
tgcttaaagctttttcttgggagactagcgctacatcagcagtttgtcgtgcctaaaaac
ttcaaactcctcgctgttcccttgtgccaaatccatgagaatgaaaagacttatggaccg
atcatatcgcagattcccaagcttctttccaagttctcattcaacatgatggagatatga
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