Raphanus sativus (radish): 108842389
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Entry
108842389 CDS
T06014
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03410
Base excision repair
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108842389
03410 Base excision repair
108842389
03420 Nucleotide excision repair
108842389
03430 Mismatch repair
108842389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108842389
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108842389
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108842389
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108842389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_19
RCF1-5-like_lid
AAA_18
BRCT_2
Rad17
nSTAND3
AAA_17
AAA_5
RuvB_N
Sigma54_activ_2
AAA_14
AAA_assoc_2
Zeta_toxin
AAA_24
NTPase_1
AAA_28
TsaE
AAA_2
AAA_16
RsgA_GTPase
AAA_31
Motif
Other DBs
NCBI-GeneID:
108842389
NCBI-ProteinID:
XP_018470788
UniProt:
A0A6J0MFT4
LinkDB
All DBs
Position
2:complement(20034195..20041273)
Genome browser
AA seq
969 aa
AA seq
DB search
MSDIRKWFMKAHEKGNGNAPKPTSSKAGAPVTNPTEIAPVKSEQAGEDLETAARKKTSKY
FAKDKAKAKEEKGVEELPAKRKLKTDSDDLVKPRPRKAIKVDDDDDDDDFEVPSARKTRD
STPSKKLKTGSGRGIASKTVDNDEDDDGGEDAPEKDTPVKSGGRGRGGRAASGASTGGRG
GGGRGRGGFMNFGERKDPPHKGEKEVPEGSPDCLAGLTFVISGTLDSLEREEAEDLIKRH
GGRVTGSVSKKTTYLLCDEDIGGKKSEKAKELGTKFLTEDGLFDMVRSSKPVKKSLPEKT
DKGTEKVSAQPKISPQKEEKRGKPLAKPSPNKVPPPSSPAKGKKKIIQSSLPWTEKYRPK
VPNEIVGNQSLVTQLHNWLSHWHEQFGGTGGKGKGKKLNDASAKKAVLLSGTPGVGKTTS
AKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAIASNIDKSKHPK
TVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLALNYRKP
TKQQMAKRLAHVARAEGLDVNDIALEELAERVNGDIRLALNQLQYMSLSMSVIKYDDIRQ
RLLSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDFDLVPLIVQENYVNYRPSSA
GKDEAKRMELLARAAESIADGDIINVQIRRHRQWQLSLSSCVASSILPASLMHGSRDVLE
QGERNFNRFGGWLGKNSTAGKNTRLLEDLHVHVLASRESSSGRETLRVDYLPLLLNRLTS
PLQTLPKDEAVSEVVEFMNSYSISQEDYDTIMELAKFKGRANPLEGVPPAVKTALTKKYK
ETSKTRMVRAADMVQLPGLKKAPKKRIAAMLEPNVESLGDEDGEPLAENEEENESDAEDS
EEATNGEKLESNLKSLNARGIQVEVDLKGAGSSGTRKAAGKGRGRGKAADAPAAEKKATG
RGAGAKRKR
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatataaggaagtggtttatgaaagcccatgagaagggcaatgggaatgctcca
aaacccacgtcttccaaggcaggtgctcctgtgacgaatcctacggagatcgcaccagta
aaatcagagcaggctggtgaagacctggagactgctgctcggaaaaagacgagcaagtat
tttgctaaagataaagcaaaagctaaagaggagaaaggggtggaagaacttcctgccaag
aggaaactcaagactgattcagatgatttagttaagccccgtccaaggaaggctatcaag
gttgatgatgatgacgacgatgatgatttcgaggtgcctagtgcgaggaagactcgtgat
agcactcccagcaaaaaactaaagactgggtcagggagaggaatcgcaagtaaaactgtt
gataatgacgaggatgatgatggtggtgaagatgccccagagaaggatactcctgttaaa
tcaggcggaagaggccgtggcggtagagctgcatcaggggcctcaactggtggaagagga
ggtggaggtagagggcgaggtgggtttatgaactttggtgaaaggaaagacccgcctcat
aaaggagaaaaggaagttcctgaaggcagccctgattgcttagccggattgacatttgta
attagtggaacacttgacagtttagaaagagaagaagcagaagatctgataaagcgacat
ggtggtcgtgttacaggctctgttagcaagaaaacgacttaccttttgtgtgatgaagac
atcggcggaaagaaatctgaaaaagctaaagagctgggcactaagttccttacagaagat
ggcctatttgacatggtccgttcctctaaacccgttaaaaagtctctacctgaaaaaaca
gacaaaggcaccgaaaaagtcagtgcacagccgaagataagtcctcagaaagaagagaaa
agaggcaaacctttagcaaaaccttcgcccaataaggttcccccaccatcttccccggca
aagggaaaaaagaaaattatccagtcttccttgccatggacggaaaagtacagaccgaag
gttccaaatgagattgttgggaatcagtcattggttactcagcttcacaactggctgtcc
cattggcatgaacaatttgggggtactggaggtaaaggaaaggggaagaaattaaatgat
gctagtgccaagaaggctgtacttttgagcggaacacctggtgttggaaaaacaacatca
gccaagttggttagtcagatgcttggtttccaggcagttgaggttaatgctagtgacagt
cggggaaaggccaactcgaatattgccaaaggaattggtgggagcaatgcaaattctgta
aaagaacttgtcaataacgaagccatagcttctaacattgataagtcaaagcacccgaag
actgttctaatcatggatgaagtagatggaatgtctgcaggtgacagaggcggtgttgcg
gacctcattgctagcattaaaatatcaaagattcctatcatctgcatttgtaatgaccga
tacagtcagaaattgaagagtttagtaaactactgtctggccctcaactaccggaagccc
acgaaacagcagatggcgaaaaggctggcacatgttgcgagagcagaaggccttgatgtt
aatgatattgccttggaggaactcgctgagagagtgaatggtgacatacggttggccctg
aatcagctccaatatatgagcctgtccatgtcagtcatcaagtacgatgatatcaggcag
cgcctgctaagcagtgcaaaggatgaagatatttcacctttcacagctgttgacaagttg
tttggttataatggtgggaagctgagaatggatgaacggattgacctaagcatgagcgat
tttgatttggttccccttattgtacaggaaaactatgtcaattataggccaagttcagcc
ggcaaagatgaggctaaacgaatggagttgcttgcccgtgctgctgaatctattgcagat
ggagatattatcaacgtgcagattcgtagacataggcaatggcaactctctctatcctcc
tgtgtcgcatcttctattctcccagcttcgctgatgcatggatcaagagatgtgctagag
cagggagaacgtaatttcaatagatttggtgggtggcttggcaagaattcaacggcggga
aaaaatacaaggttgctggaggatctgcatgttcatgtccttgcttcccgtgaatccagc
tctggaagggagactcttcgtgttgattatctaccccttctcttgaaccgcttaacaagt
ccactccagacactgccgaaggatgaagctgtttcagaagttgttgaattcatgaactcc
tactctataagccaggaggactatgatactattatggagttggcgaagtttaagggacgt
gcaaatccattagagggtgtcccacctgcagtgaaaacagctttgactaaaaaatacaag
gagacgagtaaaaccagaatggtacgtgctgctgacatggtgcagcttccggggctaaaa
aaagcgccaaagaagcgaatagctgcaatgcttgaaccaaatgttgaaagtttgggagat
gaagatggcgagccgttagcagaaaatgaagaagaaaacgaatcagacgctgaagactca
gaagaggcaactaatggagaaaagctggagtcaaatctaaaaagtctgaatgccagaggg
atccaagttgaagtggatttgaaaggagcaggaagctcaggtacaagaaaggcagctggt
aaaggcagagggagaggcaaagcagcagatgctcctgctgctgagaagaaggctacagga
cgaggcgctggtgccaagagaaagagatga
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