Raphanus sativus (radish): 108842431
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Entry
108842431 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108842431
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108842431
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108842431
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108842431
Spliceosome [BR:
rsz03041
]
Common components
Common spliceosomal components
SR proteins
108842431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_DEAH11
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
108842431
NCBI-ProteinID:
XP_056860355
UniProt:
A0A9W3D914
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Position
2:38174036..38175745
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AA seq
259 aa
AA seq
DB search
MATESPLKERDSRSPSPRKQRSLSRSRSRSMPRSRSRSRSLPRARSRSKSRSLPRARSRS
RSRSLPRHISPSRTRGRSEVENPGTTLYVTGLSTRVTDKDLESHFSKEGKVSSCFLVIEP
RTRESRGFAFVTMDTLKDADRCIKYLNQSVLEGRYITVERQNKTKKRYCVKLVLTTTIRD
DDTSSLPNIIKSTHSLIIPNVHIQLINYIASTLSTNQRTLSSINNYCFMYFVLSSVSKKA
SQNSHPRPLSWLEKLQRQW
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagtctcctctaaaagaaagagattcacgatctccttcaccacgaaaacaa
cggtccctttctaggtccagatccagatccatgccgaggtccaggtccaggtctagatct
ttgccaagggctaggtctaggtctaagtctagatctttgccaagggctaggtctaggtct
aggtctagatctttgccaaggcatatatctccatcaagaacccgtggaaggtctgaagtt
gaaaaccctggtaccactctctatgtgactggcctatccacaagagtcactgacaaggat
cttgaatcacatttctccaaggaaggcaaggtatcttcttgcttcctagtaatagagccg
cgcacccgcgagtctcgtggttttgcctttgttacaatggatacccttaaggacgctgac
cggtgcatcaagtatctcaaccaatctgtacttgaaggccgttatatcactgtcgaaagg
caaaacaaaacaaaaaaaagatattgcgtcaagctagtgttgacaacaacaatcagagat
gatgatacttcatccttacccaacatcattaagtcaacacacagcttgatcattccaaat
gttcacatccaactaatcaactatattgcttcaactctctcaactaatcaaaggacatta
tcaagtatcaacaactattgttttatgtactttgtcttatcttcagtctcgaagaaagcg
tcccagaactcccaccccaggccactatcttggcttgaaaagctccagagacagtggtaa
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