Raphanus sativus (radish): 108842511
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Entry
108842511 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108842511 isoform X1
KO
K06100
symplekin
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108842511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108842511
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108842511
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108842511
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108842511
U7-dependent histone pre-mRNA processing factors
108842511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT
HEAT_EZ
TM_HPP
Motif
Other DBs
NCBI-GeneID:
108842511
NCBI-ProteinID:
XP_018470944
UniProt:
A0A6J0MFQ8
LinkDB
All DBs
Position
2:24716433..24724962
Genome browser
AA seq
1477 aa
AA seq
DB search
MVGTIMASSYKLQGLARSAKSATDLPPKLHRLRNLRLNLKGDPSASFPTELLPLLFDLLS
DQFGAVRKFVAEILGEIGLNYVELLPEIVPLLIKSLQDDDTPAVVRQVIASGSALFRSTL
QKFALQGLHSSELDEFLQSSWTWMLKFKDEVCSLAFRQVNSGVKLCAMKFVEALILLYTP
DPSVSLESPSHQVTCPAGIQADFNISILRGGHPVLNIGDLSIEASQKLALLLDQLRHPAA
KSLNSSTIIFLINSLSSVAKKRPAFCGRILPVLLSLDAPSFLKGVHAAAANLALKTVFLS
CLECTHPAAAPWKDRLIGALKEIEGGSRAEKAEDLFYTTNGSIQDKDSVEDTKVSVEDNS
LYASSVAAESNFGRKRSGSEYSIDLNGDALTGKRSRITPSVSGESTEGLNGNSVGSLPLV
TSTSTGPSNSRVSDTGPVQQLVAMFGALVAQGEKAIGSLEILISSISADLLADVVMANMH
NILLNGSSYADGTDELVMNMSIVGSDAQNKYPPSFVAGVLSLSTAFPPVAALINPHTAKT
ENEGEELCVNHVDQQIFPAVDAVLASGLSASSVNEEGSIELPPNVDYRGNIESGIPGLDS
SAQRYVLSEAPVTSVLGSTNVEAASKNQDVTVSGELLVAVIPSASVDKSEEFSPKATGIG
SNILVSSTATSLASAPQFVLPKISAPVVNLSDEEKDSLQKLVFLRIVEAYKQVSMSGGSQ
LRFSLLAHLGVEFPSELDPWKMLQEHILSDYLSHEGHELTVRVLYRLYGEAEAEQDFFSS
TTAASAYESFLVAVAEALRDSFPPSDKSLSKLLGDSPFLPKSVLKLLESFCCPESGDKVE
KDLPSGDRVTQGLSAVWSLILTRPGIRNECLKIALQSAVHHLEEIRMKAIRLVANKLYSL
SFITQQIEDFAKDKLFSVVSCISSEKGGAETLSNDCVKPVIGAGMEPSSEATSATSVTEA
QRCLSLYFALCTKKHALFVHVFSIYKDASDPVKQAIHRQIPILVRTMGSSSELLKIIADP
PSGSENLLMQVLQTLTEGAKPSSELIHTIRKLFDTRIKDVEIIFPILPFLPRDDVLRVFP
HMVNLPMEKFQVALSRVLQGSSQSGPVLTPSEVLIAIHSIDPARDGIPLKQVTDACNTCF
AQRQTFTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWK
YPKLWVGFLKCAQSTQPQSYKVLLQLPPTQLGNALTKVSALRAPLAAHASQPDIQSSLPR
STLAVLGLVPDSQGTQTSQVQASETQESQVQESQVQASETQESQVQASETQESQMQASET
QESQMQASETQESQMQASETQESPGEQQASESQEQTSQSQQVSVPLSHSETDINQEISQV
VASHSQSSPIGTGRSDTSQSQSSPVGAGQSEMSQTTHVSDSDPPPAPTSHTHTSSDSQVS
DQREPDDEKMEDTATSENERSEAEKSKESSAEEEDRV
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaaccatcatggcttcttcgtataagcttcaaggtctcgcgagatccgccaaa
tcagccaccgatttgcctccgaagctccaccgcttacgcaatctgcgtctgaatttgaaa
ggagatccctccgcttctttccccacagagcttcttcctctcctcttcgatctcctctct
gatcaattcggtgctgtccgcaagtttgtcgccgagattcttggtgaaattggtttgaac
tatgtggaattgttacctgagatagttccccttttgatcaagtctctccaagatgatgac
acaccagctgtggtcaggcaggtcatcgcttctggatctgctttattccgttccaccctc
caaaaattcgcacttcagggtttgcattctagtgagttggatgagtttcttcaatcttcc
tggacatggatgcttaagttcaaggatgaagtatgctctttggctttcaggcaagtaaac
agtggtgtaaagttatgcgctatgaaatttgtggaagcgcttattcttttgtatacacct
gaccctagcgtctctttggagtctccttctcatcaagttacctgtcctgcaggaattcaa
gcagattttaatatatctattcttcgtggggggcatcctgttttgaatattggagacttg
tcgattgaggccagccagaaattggctttacttcttgatcagcttaggcaccctgcggca
aaatctctcaatagctccacgattatttttcttatcaatagtctttcatcagttgcaaag
aaacgtcctgcattttgtggacgaatcctgcctgttctactgagcttggatgccccaagc
tttctcaaaggagtgcatgcagcagcagcaaatcttgccctcaagactgtatttctctcc
tgcttggaatgtacacatccggctgctgcaccgtggaaggaccggttgatcggggctctg
aaagagatagaaggtggcagtcgggctgagaaagctgaagatctgttttacacaactaac
ggaagcattcaagacaaagacagtgtagaggatacgaaggtatcagtggaagataattct
ctctatgcaagttctgttgctgcggaaagtaactttggtaggaaaagatctggatcagaa
tacagtattgatctgaatggagatgctttgactggaaaacgatcaagaataacaccttct
gtgtcaggagaatctactgaaggattaaatggtaacagtgttggctctctacctctggtt
acttctacttcaactggaccaagtaatagcagagtgagtgatactggacctgttcagcaa
ctggttgctatgtttggagcattggttgcccagggtgaaaaagcaattggatctctagag
atccttatttcaagtatttctgcggatttgctggcagatgttgtgatggctaatatgcat
aatattctactaaatggttcctcttatgctgatggcaccgatgagctggtgatgaacatg
tctatagttggcagtgatgcacaaaataaatatccaccatcatttgtggctggtgttctt
tcactgtcaactgcattcccaccagttgctgccctgataaatcctcacacagcgaaaacg
gaaaatgaaggtgaagaactctgtgtgaatcatgtggaccagcagatatttccggctgta
gatgcagttcttgcaagtggcctatcagcctcttcagtaaatgaagagggcagtattgag
cttccgccaaatgtggattacagagggaatatagaaagtggtatacctggactagattct
tctgctcaacgttatgtgttatcagaagcccctgttacttctgtattgggttctacaaat
gtggaggccgccagcaagaaccaagatgtgactgtcagtggagaacttctagtcgctgtg
attccatcagcgtcagtggataagtcggaggagtttagtccaaaggcgactggcataggt
tctaacatcttggtttcctcaacggcaacttcacttgcttctgcgcctcagtttgtcttg
cctaagatatcagcacctgttgtcaacctttctgatgaagagaaagacagtttgcagaag
ctggtgtttttgcgcattgttgaagcatataaacaagtatcaatgtctggtggctcacaa
cttcgcttttctcttcttgctcacttgggagttgagtttccttcagagttggacccttgg
aaaatgttacaggaacacattctctctgattatttgagtcatgagggacatgagttgact
gtgcgggtactctacaggctatacggggaggcagaagcagaacaagatttcttctcgtca
actactgctgcgtctgcatatgaaagtttcttggtggctgtggctgaagcacttagagat
tcttttccaccgtctgataaatcattaagtaaattgctcggagattctccatttctgccg
aaatcagttctgaagttgttggaatcgttttgctgtcctgaaagtggtgacaaggttgaa
aaggacttacctagcggagaccgtgttactcaaggtctcagtgctgtttggagtctgatt
ttaacgagacctggaatccggaatgagtgcctgaagatcgctttgcagagtgctgttcat
cacttggaagagattcgcatgaaagcaatccgcctggtggcaaacaagctctattcttta
tcattcattacacaacagattgaggactttgcaaaggacaagctattttccgtagtgagt
tgcatttcttcagagaaaggaggtgctgaaacattgagcaatgattgtgtaaagccggtg
atcggtgcgggaatggaaccgtcctcagaagcaacatcagcaacttcagtaaccgaagcc
caacgctgcttgtcactctattttgcactatgtaccaagaagcacgccctttttgtccat
gtgttcagcatttacaaagatgcatcagatcctgttaagcaggctatccatcgtcaaatc
ccaatactagttcgtactatgggctcatcatctgagcttcttaaaattatagcagacccg
ccgagtggaagtgagaaccttctaatgcaggtccttcaaacccttactgagggggctaag
ccttcttcagagttgatacacactataagaaagttgtttgatacaagaataaaggatgta
gaaattattttcccaatattgccgttcctgccgagagacgatgttctacgtgttttcccc
catatggtcaatcttcctatggagaaattccaagtcgcactctctcgtgtcctgcaggga
tcatctcagtctggtccagtgcttactccatcggaagttttaattgctatccatagcatt
gacccagcgagagatggaataccgcttaaacaggtaacagatgcatgcaatacctgtttc
gcacagaggcagacattcactcaacaggttttagcaggcgttctgaatcaactggtccag
caaattccactgccgatgttattcatgcggacagttctacaagctatcggtgcttttcca
gctctgtccgacttcatcctggagatcctttctcgtctcgttagcaaacagatatggaaa
tatccgaaactgtgggtaggattcttgaaatgtgcacagtcaacacagcctcaatcatac
aaggtcttactacagcttcctccaactcagctgggaaatgcattgactaaagtttctgcc
ttaagagctcctctggccgcgcatgccagccagccagatattcagtcttcacttccaaga
tctacattggctgttcttggacttgtccctgattctcagggaacacagacgagtcaagta
caagcgagtgaaacacaagagagtcaagtacaagagagtcaagtgcaagcgagtgagaca
caagagagtcaggtgcaagcgagtgaaacacaagagagtcagatgcaagcgagtgaaaca
caagagagtcagatgcaagcgagtgaaacacaagagagtcagatgcaagcgagtgagaca
caagagagtccgggagagcagcaagcaagcgagtcgcaagagcaaacgagccagtctcag
caagtctctgtaccattgagtcactctgaaacagatattaatcaggaaatcagtcaggtg
gttgccagtcattctcaaagcagtcctattggtacgggccggtcagatacgagtcagtct
cagagcagtcccgttggtgcggggcagtctgaaatgagtcagaccacccatgtgtcggac
tcggatcctcctccagcaccaacgagccacacccatacatcatcagattctcaagtgtcg
gaccagagagagcccgatgatgagaagatggaggacacggcaacctcagaaaatgagagg
tccgaagctgagaagtcaaaggagtcttctgcagaagaagaagaccgagtgtaa
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integrated database retrieval system
