Raphanus sativus (radish): 108842684
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Entry
108842684 CDS
T06014
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03020
RNA polymerase
rsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108842684
09124 Replication and repair
03420 Nucleotide excision repair
108842684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108842684
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108842684
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108842684
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108842684
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108842684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108842684
NCBI-ProteinID:
XP_018471169
UniProt:
A0A6J0MGC8
LinkDB
All DBs
Position
2:complement(32131546..32137843)
Genome browser
AA seq
1189 aa
AA seq
DB search
MEYNNEYEQEPTYIEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPP
STMFVRMLARASAKGGSSGQYIRCTLPYIKTEIPIIIVFRALGFVADKDILEHICYDFAD
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATIGVTKEKRIKYAKDILQKEMLPHVGVG
EFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
VRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
SAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHH
LVAKGFIEYVDTEEEETTMISMTINDLVQARLRPDEAYSETYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
PDRASTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHS
ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAANFLKERLFDQSDAYRVHVCETCGLIAIANLKKNS
FECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKGLKNAKGRK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggagtataacaacgaatacgaacaagaaccgacttacatcgaagaagatgacgatgag
gagatcacccaggaggacgcctgggcggttatctctgcctatttcgaagagaaaggtctc
gttcgccagcagctcgattccttcgacgagttcatccagaacactatgcaggaaatcgtt
gacgagtcggctgatatcgagatccgacctgaatcccagcacaatcctggccaccaatct
gatttcgccgagacaatctacaagattagttttggacagatttatctgagtaaacccatg
atgacggaatctgatggagagactgccaccttgttccctaaagctgcaaggctgagaaac
ctcacgtactcagctcctttgtatgtcgatgtttctaagagagttataaagaaagggcat
gatggtgaggaagttacggagacacaggattttaccaaagttttcatcggaaaggttccc
atcatgctccggtctagttactgtaccttgtttcagaactcggagaaagatctgacagag
cttggagaatgtccttatgatcagggcggatacttcattatcaatggcagtgaaaaggtt
ctgattgctcaggagaagatgagcacgaaccatgtttatgtttttaagaagagacagcca
aataagtatgcttatgttggtgaagtccgttccatggcggagaaccaaaataggcctcca
agcacaatgttcgtgcgcatgcttgctcgtgctagtgcaaaagggggttcatctggacag
tatattcggtgtactctcccttacatcaaaacagaaattcctattatcattgtatttcgt
gcattgggatttgttgccgataaggacattttggaacacatttgctatgactttgccgat
actcagatgatggagttgctcaggccttccttagaagaagcttttgttattcaaaatcag
caggttgctctcgattatattgggaaacgtggtgcaactattggtgtaaccaaggaaaag
aggataaagtatgcaaaagatatccttcagaaagaaatgcttcctcatgtaggagttggg
gagttttgtgagacaaagaaagcttactatttcgggtatattatacaccggctgctgctt
tgtgcacttggccgaaggccagaagatgatcgggatcattatggtaacaaaaggcttgat
cttgctggtcctttacttggagggctctttagaatgcttttcagaaagctgacgagggat
gtgagatcttatgtacagaagtgcgttgacaatggcaaagaagtcaatcttcaatttgcc
attaaagctaaaacaatcacctctggcctgaaatattctcttgctactgggaactggggc
caggcaaacgctgctggcacaagggctggagtctctcaggttctaaatcggttaacatat
gcttccactttgtcacatctgaggcgtctcaattctcctattgggcgtgaaggaaaattg
gcaaaaccaagacaactgcacaattcacagtggggtatgatgtgccctgctgaaacacct
gaaggacaggcttgtggtctagtgaaaaacttggcgctcatggtctatattacagttggg
tcagctgcttatcccatcttggaatttctggaagaatggggaactgagaattttgaggaa
atctctccatcagttataccccaagcgacaaaaatctttgttaatggaatgtgggttgga
gttcatcgagatcctgacatgttggtgaaaacgttgagacgtttgaggagaagggttgat
gttaacactgaagttggcgttgttagagatattcgtctgaaagagctccggatatacact
gattatggtcgttgtagtcgtcccttgtttattgtggataaccagaggctgttgataaag
aagagagatatctatgctctgcaacaaagggaaagtgcagaagaagatggttggcatcat
ctagttgcaaaagggtttatagaatacgtagacacagaggaagaggagacgactatgata
tccatgactatcaatgatctggttcaagccagactccgtcctgacgaggcatattctgaa
acttacacacattgtgagattcacccttctttgatattgggcgtttgtgcttcaattata
ccatttcccgaccataaccagtcacctcgtaatacatatcaatctgctatgggaaagcaa
gctatgggaatatatgtaaccaactaccaatttcgcatggatacattagcctatgttctc
tattaccctcaaaagcctctggttaccacaagagctatggagcatcttcattttaggcaa
cttccagcagggattaatgctattgttgccatttcttgctactctggatataatcaggaa
gattctgtcatcatgaatcagtcttcaatagaccgtggtttctttagatccttgttcttt
cggtcatacagagacgaagagaaaaaaatggggacccttgtcaaagaagactttggacgc
ccagacagggcaagtacgatgggtatgcgacatggttcttatgagaaactggatgatgat
ggtcttgcacctcctggtactagagtttcaggtgaagatgtaatcattgggaaaaccact
cccatatctcaagatgaggctcaaggacaatcatcacgatacaccagacgtgatcatagt
ataagcttgcgacatagtgaaactggaatggttgatcaggtattgttaaccaccaatgca
gatggtttgaggtttgtgaaagtgagggttagatccgttcgtatccctcaaattggagac
aaattcagtagtagacacggtcagaagggaactgttggcatgacgtacacacaggaggac
atgccttggacgattgaaggcgttactcctgacattatagtgaatccacatgctattccc
tctcggatgacaattggacagctgattgaatgcatcatggggaaagtggcagctcacatg
gggaaagaaggagacgctaccccttttacagatgtcacggtggataatataagcaaagct
ctccataaatgtgggtaccagatgcgtggatttgagagaatgtacaatggtcacacgggc
agaccactcacagctatgatattccttggaccaacgtattaccaaaggttgaagcatatg
gttgatgacaagattcactcgcgtggacgaggtccggtgcaaatcttaacaagacagccg
gctgaaggacgatcccgtgatggtggtctccgttttggagaaatggaacgcgactgcatg
attgcacatggagctgccaactttctgaaagagaggctgtttgatcagagcgatgcgtat
agggtacatgtgtgtgaaacctgtgggctcatcgccattgcaaacctgaagaagaattct
ttcgaatgcagaggttgcaagaacaaaacagacattgttcaggttcacattccatatgct
tgcaagttactcttccaagagcttatgtcaatggcgattgcaccacggatgctcactaaa
ggcttgaaaaatgctaaaggcagaaagtga
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integrated database retrieval system
