Raphanus sativus (radish): 108842737
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Entry
108842737 CDS
T06014
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108842737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108842737
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108842737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108842737
NCBI-ProteinID:
XP_018471245
UniProt:
A0A6J0MFG8
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Position
2:2052533..2058071
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AA seq
797 aa
AA seq
DB search
MRRLGGGVEDEEKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQ
RYYDLYMRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKS
KQAPSKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEF
VLQNFTEMNKLWVRIQHQGPGTVRERQEKERNELRDLVGKNLHVLGQIEGVDLDMYKETV
LPRILEQVVNGKDELAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQL
MDRLSNYAASSPDVLHEFLQVEAFAKLNNAIGKVIDTQLEMPIVGAMTLFVSLLTFALRV
HPDRLDYVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYNDIVTALTLSNYPRV
MDHLDDGTNKVMAMLIIQSIMKNNSCISTADKVEVLFELIKGLIKDLDGNATEELDEEDF
QEEQNSVARLINMLDNEEPEEMIKIIYVVRKHIMTGGTRRLPFTIPPLVFSALRLVRQLE
SQSGDITGEDVQATPRRIFQILNQTIEVLSSVPRPELALRLYLQCAEAASDCDLEPVAYE
FFTQAFILYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPD
QCRAVYACSHLFWVDDDDLDGIKDGERALLCLRRALRIANAAQQMANATRGSSGPVTLFV
EILNKYIYFYEKGNPHITPSDIQSLIELINTEMQSDNNNGNTRRTHSDPFFTSTLRYIRF
QKQKGGLIGDKYDLIKL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggctcggcggaggagtagaagacgaggagaagtggctggcggaaggaatcgcc
ggaatacagcacaacgccttcttcatgcatcgcgccttggacgcgaacaatctcagagaa
gtcctcaagtactccgctctcatgctatccgagctccgcacctccaagctctctcctcag
agatactacgatctctatatgagagctttcgatcagttgaggcagttggagattttcttc
aaggatgagagcaggcatggcttgcctgtggttgatttgtatgaacttgttcaacacgcc
ggcaacattttgccccggatgtatctgctatgtacggtaggatctgtttacatcaaaagc
aagcaggctccatctaaggatgttctcaaggatctcgtggagatgtgtcgtggcgttcaa
catccgattcgtggactctttttgaggagttatctagcgcaagtgagtagggataagtta
cctgagattggttcagactacgaaggagatgcaaatactgtgatggatgctgtggagttt
gtgctacaaaatttcactgagatgaataagctctgggttcgaattcagcatcagggacct
ggaacagttcgagaaaggcaggagaaagagaggaacgaacttcgtgatcttgttgggaaa
aatttacacgttctaggacagatagaaggtgttgaccttgatatgtacaaagagactgtt
cttcctaggatcttagaacaggtcgtcaatggtaaggatgagctggctcagtattatctg
atggaatgcattattcaagtctttcctgatgagtaccatttgcagactctggaaacacta
ttggctgcttgtacccaactgatgccaacagttgacaccaagatagtgttaactcaactg
atggaccggctgtcaaactatgctgcctcaagtccagatgtgttgcacgaatttttgcaa
gtggaggcttttgcgaaattgaacaatgcaattggaaaggtgatagatacacagcttgag
atgcctattgttggagctatgacactgtttgtctctcttctgacttttgcactccgggtt
catcctgatcggcttgactatgtggatcaagtattgggggcatgtgtagttaagctttcc
agtgtgccaaagctggaggacgcccgtgcaatgaaacaagttgttgcacttctgagtgct
cctttagaaaaatacaatgacatagttacagctcttacactgtcaaattacccacgtgtc
atggatcatcttgatgatggaacgaataaagtaatggcaatgcttattattcagagtata
atgaaaaacaactcgtgtatttcaactgctgataaggttgaggtgttgtttgaattaata
aaaggacttataaaggatttggacggaaacgctacagaggagcttgatgaagaggatttc
caggaggaacaaaattcagtagccagactgataaatatgcttgacaatgaagaaccagag
gaaatgataaagattatatatgttgtgagaaagcatattatgacaggaggaactcgacgg
ctgccttttaccattcccccgcttgttttttctgcactcaggttggtcaggcagctagaa
tcccagagtggtgatataactggagaagacgtccaagcaaccccgaggaggatttttcag
attctcaatcagacaatcgaggttctttcgtcagttccacgtcctgaactggctctaagg
ctctacctccagtgcgctgaggccgcaagtgattgtgatcttgagcctgttgcttatgag
tttttcacccaagcatttatattatatgaagaagaaatcgcggactccaaggcacaggtc
actgcaattcatctgattgttggaaccttgcaaaggatcaatgtctttggtgtcgaaaac
agagacaccttgacacataaagcaactgggtactcagcaaggcttttaaagaagcctgat
caatgtcgagcggtttatgcatgttctcacctcttttgggtcgatgatgatgatctagat
ggcatcaaagatggagaaagagctcttctatgtttaagacgtgcactgaggatagcaaac
gcagctcaacaaatggctaatgcaaccagaggtagcagcggaccagtcacgctgtttgtc
gaaatcttgaacaagtacatatacttctatgagaaagggaatccacatataactccatct
gatatacagagtctgatagagttaatcaacaccgagatgcaaagcgacaacaacaacggt
aacacaagaagaacccactcagatcctttctttacgagtacgttgcgttacataaggttc
cagaaacagaaaggtggcttgattggtgacaaatatgatctcatcaagttgtga
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