Raphanus sativus (radish): 108842746
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Entry
108842746 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108842746
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108842746
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108842746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
ResIII
AAA_7
nSTAND3
TrwB_AAD_bind
SRP54
ABC_tran
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
108842746
NCBI-ProteinID:
XP_018471258
UniProt:
A0A6J0MH60
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All DBs
Position
2:30824740..30829596
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AA seq
695 aa
AA seq
DB search
MAFWKPGTEKPSFVEDEEGGIVLMSNNLSSSSSSSYGYANIEKQRQRLPVYKYMTEILYL
VENHATTIIVGETGSGKTTQIPQFLKEAGWAEGGRVIACTQPRRLAVQSVSARVAEEMGV
KLGDEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNTSKKRQAPEGSTQGPKLEPAILSVE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQDDIETAIKLLAEEAH
SNQKNSSGLLPLPLYSGLSRAEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLKQMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASNELGCSDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHITFLNVYKGFLESKKSSQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCE
GDIDAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEAAPHFYQNRQNNMSL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttggaaaccaggaacggagaaaccaagcttcgtcgaggatgaagaaggaggc
atagtcctcatgtccaacaatctctcatcctcttcttcctctagttatgggtatgcgaat
atagagaagcagaggcagagattgccagtgtacaagtacatgactgagattctctatttg
gtggagaatcacgctaccaccatcatcgttggcgagactggcagtggcaaaactacccaa
attcctcagttccttaaagaagctggatgggctgaaggaggtcgagttattgcttgcact
cagccaagacgtttagctgtccagtcggtttctgcaagggtggcagaagagatgggagtg
aagcttggggatgaagttggctacactattcgatttgaagatcatacaacttcaggtgtg
actagtgtgaaatttctcactgatggggtacttatccgagagatgatggaggatcctctc
ttgactaagtatagtgttattatggtagatgaagctcatgagagatctatctcaactgac
attttactaggactcttaaagaagatacaacgtcgtcgtcctgagctgcgccttattatc
tcgtcagccacaatcgaagcaaaagcaatgttcaatttcttcaataccagcaaaaaacgc
caggcgccagaaggtagtacccaaggacctaagttggaacctgcaatcttatctgtcgag
ggcagaggcttcagtgtgaaaattcactatgttgaggagcctgtttcagattatatcaga
tcggttgtttcaacgatattgttgattaatgaacgggagccacctggggatgttcttgta
tttctaacaggtcaagatgatattgaaactgctatcaaacttcttgcagaagaagctcat
agcaatcaaaagaactcttcaggactgctccctctgccactatattcaggactttcacga
gcagaacaggaactaatctttaccccaactcccagaggaaagagaaaagttatactctca
acaaatattgcagaaacatcactgactctggagggagttgtctatgtgattgatagtggt
ttctcaaagcagaaattctataacccgatttcagatatcgaaagtcttgtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggccgggcgagttcggcctggaaag
tgttacaggctttacaccgaagattattttctcaaacaaatgcctggagaaggcataccg
gagatgcagaggtcgaatcttgtttcaactgtgatacagctaaaagctttgggcatagat
aatatattgggtttcgattggccttcacctccatccccacaagcaatgatacgggcactt
gaagtactttattcacttcaaatccttgatgatgatgcaaaactcacttctccaacagga
ttccaagtagcagaacttccactggacccaatgatatcgaagatgatcttagcttcaaat
gagcttggttgttcagatgagatcattacaatcgctgcagtactctctatccaatccgtt
tgggtcattgccaggggagtacagaaagaacaagatgaagcaaaactgagatttgctgct
gcagagggtgaccatatcacattcctgaatgtatacaaagggtttcttgagtccaaaaaa
tcttcacaatggtgttacaagaacttcctcaactaccagtccatgaaaaaagttgttgaa
atcagggatcaactcaaacggattgctcggagattaggcatcaccctgaaatcatgtgaa
ggagacattgatgctgtgagaaaagcagtgactgcaggttttttcgccaatgcatgccgc
ttagaaccacacagcaatggggtattcaagactattagaggctctgaagaagtttatatt
cacccatcctccgtattgttcagggtgaatccgaaatgggtggtttaccagtccattgtc
tcaacagagcgtcaatacatgcggaatgtcgtcaccatcaatccttcttggctgacagaa
gctgctccacacttttaccagaaccggcaaaacaatatgtccttgtaa
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